YALI0F03773t - Ylli_pol

Overview

Description Ylli relics, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli
Locus type mobile_element
Gene name Ylli_pol
Locus tag YALI0F03773t
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 553216..554380
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1165 (nuc.)
Previous locus YALI0F03751g Next locus YALI0F03795g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F03773t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F03773tYALI0F03773t_mRNA-001YALI0F03773t_CDS-001

Nucleotide sequence

 

>YALI0F03773t
ACCTTGAAAGAAGAGCCAACTCTCGGCCTGAGAGATCGATCGGAAATCGACCACCTCCGG
TGGAGCATGGGACCACTTACTCTAGAGAACTTCATGTTTCACAAGACCTCATCTCCCGAC
TTGCCAAACTTCCCACACACACTTGCAAGACCGAAGAAGTGGACTCAACGAAGCGACTAC
GGGGGCATTTCTGACGACATGATCTGGCAGGAGGTAATGCATGACCTTCGAAAACACTAC
ATCGCCGACGCCAATAAAGCACAAGTTCTTCACCTCATGCGGATATCTCGACTTCCGCTC
GTGAAATGGAGATACCCTGACGACCACGTTTTCACCAAGAAGAATCCAGGATGCGGGCTC
TGTGATAAGGCCATCATTCAGGATCTGCACGAGCATATCTTCTGCAAGTGCGAAGTTCTT
CTTTCCATGTTGACCAAGATGAAGATTCCGTCAGTGGACTCTCTAAAGGACTGGATCTTT
ACCGAGTCGAAATGTGGAGTACTCCCCTCTTTCACAGGGCATGTGAACAGTGACGCCCCC
CGGAAACATCAACAAGTCAAGACACGCAAATATCTGCGGGAATTGGCTTATGGGATCTGG
AAGATGGAGAGATCCCTCCGGTACTCAGGGGACGACGCCACCCTGGGACATGTCCAACAG
GGTCTGCTTCAATTCCTGAAGGAAGCCCAGATGTGTTTCTACGATGGACAACCGCCAGCA
CTTCACGATGAGCGAGAGTAGACACAGTAGCAAGCGTAAAAGGCGGCCGAGGCCACCGAG
AGAACAGCGTAGCAGGGCGCGTAGTCACCACAGGGGACGCAGAACCAAACCAATGACGAA
GAAGAACCACAAGGAGACGTTTTCAAAGGCAATGCAAACGAAGAGGGCAATGGAAGGATT
GAGATTAGAGAACTGGAGACTGGAGTGGCGTTTTCCCGATGAACGAACAAACACGCGAAG
CTATGTGGACCAACATACAACACGGACTGAACCAGGTTTTTTTATGATTTTTTTACTGGA
AATAGGTACGTGCCAAGTTGGACCATGACACTAAACGTGTTTAATTAGTAATATTCGTGT
AAGCGTACATTCATTTCAAAGGTTATTCTTTCACAGCAAAGTTATAATTAAATGAATGTA
TATGCAGAAAAAAAAAAAAAAAAAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F03773t_CDS-001

Protein length: 247 aa.
Gene: Ylli_pol

>YALI0F03773t_CDS-001 TLKEEPTLGLRDRSEIDHLRWSMGPLTLENFMFHKTSSPDLPNFPHTLARPKKWTQRSDY
GGISDDMIWQEVMHDLRKHYIADANKAQVLHLMRISRLPLVKWRYPDDHVFTKKNPGCGL
CDKAIIQDLHEHIFCKCEVLLSMLTKMKIPSVDSLKDWIFTESKCGVLPSFTGHVNSDAP
RKHQQVKTRKYLRELAYGIWKMERSLRYSGDDATLGHVQQGLLQFLKEAQMCFYDGQPPA
LHDERE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG