YALI0F02365g

Overview

Description weakly similar to uniprot|P53692 Schizosaccharomyces pombe DNA repair protein rad18
Locus type CDS
Locus tag YALI0F02365g

Location

Species Yarrowia lipolytica Positions 360463..363786
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 3324 (nuc.)
Previous locus YALI0F02343g Next locus YALI0F02387g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F02365g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F02365gYALI0F02365g_mRNA-001YALI0F02365g_CDS-001

Nucleotide sequence

 

>YALI0F02365g
ATGAGTCGACCCCGCGACGACGACGCGAGCGATGATGGCCAGCAGCGGCCTCGTAAGCGC
CAGAACACCCAAGACTTCTTCAGGTACCACCATCCAGGTTTCATTCGGTCTGTGGAGTGC
ATCAACTTCATGTGCCACGAAAACCTGAAGATCGATGTTGGCCCCGGAATCACGTTTGTT
TCCGGCCAGAACGGCCACGGCAAATCTGCTATTCTTAACGCTTTGATCCAGGTCTTTTCA
ACTGACCGTAAGATGAAGGGTGAGCGAGGTACAGGTGCTGCTCTGCGACGAAACATTGAG
GACAACAAGAAGGCCAAGTCTGCCAAGATCATTGTCAAGATCAACAACAAGGAGGCTGAC
GAAGATCTGGATTTCACTGATGGAGGAGTAAAGGGATATACTATGTCTCCATTTGAGCCT
GAGACGTATGGCGATATCATCATCATCGAGAGAGAAATCTTCGAGAAGTCCAGAAAGCTC
AAAATTATGACCAAGAAGAAGGAGTTGATTTCTGAGAAGACAGAAGTCCTTCTGCAAATC
ATGAAACACTTCTCCTACCAGTTCGACAACCGTCTTGTGATCCAGACCCAGGAGAACGCC
AAGAAGAGAGGAGACCCTAAGAGTCTGTTTGACTTCTTTTACAACGGATCTGGTTTCGAG
AGCATCGAGAACGACCTTGCCGCGATGAAAAGAGAAGTCGGACAGCAGCATGAGTGCCTC
GAGTCTTCTTTGTTGCAAACCACCCTCGCCAAGAAGGAGCGCAGAGACGAACTTAAGGCC
GAATGCGAGCTTACCGCCCACACCAAGGAGCTCTACGACAATCTTCAACGGTACAAGGCC
ATGTATCAATGGTTGGATTACTCCACTTTCCAGCTGGCTCTTAACAATGCTCTCAGTGTA
AAGATGAAGCTTGAGGACAAGTGCAAGCAACTCAAGGAGGTGGGTGCAAAGCGTCGAGCC
CAACTGGAGGAACACAAGCTGGCTTTGGAGCAGTGTGAAAAAGAAGACCCTGAGCTTGAT
GCGCAGATTGCTGAGGCCAACAGAAAAAAGACACTGCTAAAAAATGAGAAAGACGACATC
AATAGACAGCTCCGGTCTTCAGAAAGAGATGTCGAGGATCTCGAGGACCAAATAAGGCTG
TTAAACCATGCCATTGCTAAGCTTCGAGCGGAGCGAGATCAGTCGAACTCCAACGCCGAA
CACAAACGACTGGATGCAAAGATCAAAGCGTGTGAAGAGAAAGTCACCACTGCTGAGACG
CAAATCAGAGCATTCAAGCTCAAGCTGGAGGAGAAGAGAAATATCTGGAGGGATGCAAGA
TCCAAGTCTCAGGATGCTTCATCGCCGAGAACCCAGAAGGAGGCTCAATTGCGCGATGCC
AGGGACGAGGCAAGTCGGCTGGAGGCAATGTCAAGAGATAAGGGTAACCCCATTGCTGGT
TTTGGTCACCAGTTCGTCGAGGCCGATCGTATCATTCAGACCAACATGGGCAGGTTCAGA
CAGCCACCACTTGGCCCTATAGGCCAGTACATCAAGGTCAAGCCTGGTACTAGCCAACAA
GAGCTAACGCTGATCAATAGTCATCAACCTCTCACAAGATTGCTCAGATCGTATGTCGTT
GCGACTCCTGAGGATGAACGAACGCTGAGAAGCATATTGCCACGCAACCATAACCCTACG
ATCTATTATGTCAAACCCGACAATTACGATGTGGATCGTATTTCACCCTCTTCCCAGTTC
AAAACTATTTTGCGGTGCCTTGACGTTTCGGAGGCTCGTGTTATCCAGGCCTTGGTCGAG
TGGGCAGCGGTGCATAGTACCGCTATCGCTGGTAGTACCGAAGAGGCTGTTAGAGCTCTG
AAGCAGGGGTCGCAAAACTTGGAATCAGCGATTGCCCCTCATAAAACGTCGGATAGGTTT
ATTGTTACTGCAACGCAGAGAGGCTCTCAGCTTTCTTCTTCTGGGGTTGTGCAGTCGGGC
CTTCTGCGGGTAGGAAAGGCGATTGTGACTGCTGAAGACGTTTCTGAGGCCAAGAAACGA
GTCGCTGTATGCGAGCGGGAGCTGCAGCCGCTGAAGGAGGAACTCAGACGCCTGGAGCAA
GAGGAGCAGATGGCTCTACGAGAGTTCAGATCCCTCGAAGATAAAGAATCAGTGTTCGAA
CAGAAGCTCCAGTCGCTTAGAAGAGAACATGCTTTAGCTGTGGCAGAGAGGGACTCGATT
CCTGATGCACCCAGCACAGACGAGACTGACCAGGCTATCGAGACCAAGACTCAGGAGCTG
GATAACAGCAAGCAGCAGCTGTCTGAGGCACGCGAGGCTCTGGAAGCGGCAAAGGTACGT
TCGCGTGAGATCGCCAATTCTGAGATGGAAGCTGAAGTGGAGCTCGACAAGCTCAACGCG
AAAGTACACGAAAAGTTTTTGGCTACCGAAGAAGCCAACTTGAGGTACACGGCACATCAG
GACGTCGTGACCAGCACACTGCAGAAGTTCGAGCTGGCCAAGAAGAAGCTCGCGGAGAAG
GAGGTTGAGCTAGTTGATATACAGGCCAACATGGAGACCCAGCTTGCTGCTGCACAGGCT
CTCAGCGAGGAGCACGTTCCTTTAGATGAAGGCGTCGACTTAGAGAATGGTTTTGACTAC
TGTACCAAGCGTACTGGTGAGTTGCAGGCCAAGATCGATGCTGCAAAGAAGCGAAACCTC
CGAGACTACCGTATAGTCTATGCAGAATTTCAGGAGGCGGAGGAGGCATACCGACTTGCT
AAGGAGGAGTTTGAGGCGCAGAAGAAGGACGTTAGAGCTCTAGGAGAGACGGAGGCAGAC
CGTGTTCTGGCTAAGGGGCAGGCTCTTTCTCTTGGTATTATGCAGACCAGTGCTTACTTT
AGTAACATCATGAAGTCTAGGGCAGCCTCAGCTGATATCGTTTTCGATCTGAAAACCAGA
AAGCTAGAAGTGAAGAACTACAAGCTCGCTTCTACTTCCGATACTTCGTCCAAGGGAGGT
GCTCGAGATGTGGCTACCACTTCTGGTGGAGAGCACTCTTTCCTTCAGTCAGCTCTCATG
GCCGCTCTATGGCAGATGGTAGATGCTCCTATCATCTGTCTGGATGAGTACGAGGTGTTC
ATGGACGACACCACTCGAGTCACGGCACAAAAGAACCTGATCAATACTCTCGGAGGCTTG
AAGCAGCGCGCCCAGGCTATTCTGATTTCCCCCACGGTGGTGAAGAACAGCGCCGTGGAC
GATGCTAGATTCACGTATGTGGAGGTTCGAGATCCCAGTTTTGCTTCTCGAAATCGGTAA
TCAATATATGTAATATTGGGATGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F02365g_CDS-001

Protein length: 1100 aa.
Product: Conserved hypothetical protein

>YALI0F02365g_CDS-001 MSRPRDDDASDDGQQRPRKRQNTQDFFRYHHPGFIRSVECINFMCHENLKIDVGPGITFV
SGQNGHGKSAILNALIQVFSTDRKMKGERGTGAALRRNIEDNKKAKSAKIIVKINNKEAD
EDLDFTDGGVKGYTMSPFEPETYGDIIIIEREIFEKSRKLKIMTKKKELISEKTEVLLQI
MKHFSYQFDNRLVIQTQENAKKRGDPKSLFDFFYNGSGFESIENDLAAMKREVGQQHECL
ESSLLQTTLAKKERRDELKAECELTAHTKELYDNLQRYKAMYQWLDYSTFQLALNNALSV
KMKLEDKCKQLKEVGAKRRAQLEEHKLALEQCEKEDPELDAQIAEANRKKTLLKNEKDDI
NRQLRSSERDVEDLEDQIRLLNHAIAKLRAERDQSNSNAEHKRLDAKIKACEEKVTTAET
QIRAFKLKLEEKRNIWRDARSKSQDASSPRTQKEAQLRDARDEASRLEAMSRDKGNPIAG
FGHQFVEADRIIQTNMGRFRQPPLGPIGQYIKVKPGTSQQELTLINSHQPLTRLLRSYVV
ATPEDERTLRSILPRNHNPTIYYVKPDNYDVDRISPSSQFKTILRCLDVSEARVIQALVE
WAAVHSTAIAGSTEEAVRALKQGSQNLESAIAPHKTSDRFIVTATQRGSQLSSSGVVQSG
LLRVGKAIVTAEDVSEAKKRVAVCERELQPLKEELRRLEQEEQMALREFRSLEDKESVFE
QKLQSLRREHALAVAERDSIPDAPSTDETDQAIETKTQELDNSKQQLSEAREALEAAKVR
SREIANSEMEAEVELDKLNAKVHEKFLATEEANLRYTAHQDVVTSTLQKFELAKKKLAEK
EVELVDIQANMETQLAAAQALSEEHVPLDEGVDLENGFDYCTKRTGELQAKIDAAKKRNL
RDYRIVYAEFQEAEEAYRLAKEEFEAQKKDVRALGETEADRVLAKGQALSLGIMQTSAYF
SNIMKSRAASADIVFDLKTRKLEVKNYKLASTSDTSSKGGARDVATTSGGEHSFLQSALM
AALWQMVDAPIICLDEYEVFMDDTTRVTAQKNLINTLGGLKQRAQAILISPTVVKNSAVD
DARFTYVEVRDPSFASRNR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG