YALI0E34650g

Overview

Description weakly similar to uniprot|O94400 Schizosaccharomyces pombe Putative PHD-type zinc finger
Locus type CDS
Locus tag YALI0E34650g

Location

Species Yarrowia lipolytica Positions 4127221..4128977
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1757 (nuc.)
Previous locus YALI0E34606t Next locus YALI0E34672g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E34650g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E34650gYALI0E34650g_mRNA-001YALI0E34650g_CDS-001

Nucleotide sequence

 

>YALI0E34650g
ATGGAATGTACCATCTGTCTCGAGCCCATCTCCGCGGCCTCCACGACAGGCCATGTGCGC
TGCGGCCACTGGTTCCACTTCGACTGTTTGCATCTCTGGTCGCAGCGAAGTAGTTCGTGC
CCCATGTGTCGCCAGCAGTTTGACGAGCTGACCAAGAGAACCATCTACGAGTCGGAGACG
TCGCACACAGCGTCTTCAATCCCCATCTTTGGGCCAGTGATCAAACGGATTCCGTGCGTA
CGACGACCGGTGCCGCTGTCACCAGTGCCTCCAGAAGAAGCCATGCGCCTTTACGAGTTT
GTGTTCCAGCAGGACGACGCCGAAATGGAGGACGTGGAGTGCGAACTCTGCGGTCAGAGC
CCCTGTGTCTGTGGCAATCAAGAGGAGCCCTCGTTTGCCCACCCTTCAACCACAACCCGA
AGACGAGGACCTAACAGAAGCCCCGGCCGAAGTCGTGCCTCGAATATGCTAGGACGGCTC
GGTCGACGTCAGATGTCGCAGAACTCGCAGTCTCACCTGGTTTTCGACACCAGGCGACGC
CGGACAACCTCGGCTGCAGGCGCACGGGGACTGACGCTCTCCTCCGACAATTACTTTCTC
AACGATGACGACGAGGAAGTCGACCCTCTAACCACAATCCCAACCGGACTGTCGTCCTCC
CGAATGCTCGACGACGAAGCCATGGGCCGCATCCAGGACAATATTGAGGAAACCAGAAAC
CTGGCTCGAGCATCGCGAGCATCTGTGGAGGAACGTGCATGGCGGTTTCTGGACGAGTAC
CGCCGAGAAGAACGGCAACCCAACACTGGTCGACGCCGATCGTCGCTGTTCAACGTCTTC
AATGCCGATAACGAGGACGAAAGCCGCCCTTCTACTACCAACGATACGCCCCGAACCAGT
GTCCCCAGCTCTCACCACACCTCTGTGGCTACCTCAATTTCATCTGCATCTGGCTCGTCT
GTATTCTCGGCCTTTTCCTCGAGATCGTCAGCCTCGTCCTCCCGCATGTCATTGGCCTCG
CAGCCGTGCTCTTCTCGACAATCGAGTACGCCCATGCTGTCGTCTCCAGTCACATTTCGA
CGGCCTACCCCTCTGCCGTTCAGAAACCCGCTCGCCACCAACTCATCTAACAGCACCAAC
GACAATACGGCTGAAAGCGAAGTTCCCAGTCCTCGTAGCGGAAGCCCCAGAAACAGTCCT
CCAGCTGAAGAGGAGACACAGCAACAGCAACCCCCATCAGGCTCAGTCAGCCCAGCCACA
GACGCCATTTCGCACATCCATGTAAACTCTCCTGAGACCGCCACAGGCTCGTCCACAGCC
GAAGGCCAAACCCCTCTAACCCACAACTCTGCTCAGAACTCGGCCGAGAGTGTCAGCAGC
AGCGGTCATTCGTTGTCGTACGAGAAAAAGATGGAGATCCGGAAGATTGTCAAGACCCGG
CTGCACAGATACTACCCGGATTTCATTTCCAAGGAGCAGTTTACGGAAATCAACATGTCC
GTGTGTGATCGGGTCTACTCATACATTAAGGAGTCCGAGTCTCGTGAACCCTTCACTGCC
CCACAAGCGGAAAAATGGACCAAGGTTGTCCACCACCTTGTGAGTGCGGATCTCGTGGCG
CGAGATTTGCTCGGATAGACGGTGCAGTGCAAGGATATATTTATTTATGCCCATCTTTTA
TATTGATCGGCCCCATGTGGAACATTACTTTTCTTTCAAATAGTTCTGTACTTGTATATA
TTTCGATGAGTTGAGAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E34650g_CDS-001

Protein length: 546 aa.
Product: Conserved hypothetical protein

>YALI0E34650g_CDS-001 MECTICLEPISAASTTGHVRCGHWFHFDCLHLWSQRSSSCPMCRQQFDELTKRTIYESET
SHTASSIPIFGPVIKRIPCVRRPVPLSPVPPEEAMRLYEFVFQQDDAEMEDVECELCGQS
PCVCGNQEEPSFAHPSTTTRRRGPNRSPGRSRASNMLGRLGRRQMSQNSQSHLVFDTRRR
RTTSAAGARGLTLSSDNYFLNDDDEEVDPLTTIPTGLSSSRMLDDEAMGRIQDNIEETRN
LARASRASVEERAWRFLDEYRREERQPNTGRRRSSLFNVFNADNEDESRPSTTNDTPRTS
VPSSHHTSVATSISSASGSSVFSAFSSRSSASSSRMSLASQPCSSRQSSTPMLSSPVTFR
RPTPLPFRNPLATNSSNSTNDNTAESEVPSPRSGSPRNSPPAEEETQQQQPPSGSVSPAT
DAISHIHVNSPETATGSSTAEGQTPLTHNSAQNSAESVSSSGHSLSYEKKMEIRKIVKTR
LHRYYPDFISKEQFTEINMSVCDRVYSYIKESESREPFTAPQAEKWTKVVHHLVSADLVA
RDLLG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG