YALI0E32439g

Overview

Description weakly similar to uniprot|Q12347 Saccharomyces cerevisiae YLR097C HRT3 Putative SCF-ubiquitin ligase F- box protein
Locus type CDS
Locus tag YALI0E32439g

Location

Species Yarrowia lipolytica Positions 3848746..3850220
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1475 (nuc.)
Previous locus YALI0E32417g Next locus YALI0E32450r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E32439g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E32439gYALI0E32439g_mRNA-001YALI0E32439g_CDS-001

Nucleotide sequence

 

>YALI0E32439g
ATGTTTATTAAACACTATTTTACACATCACGACTTCGATCCGTTACTGACAGCCACAGCC
TTTGACGTCACAACAATGACCAACCTCAACCTGGCACACCCGTCCGGCAGCTTCCAGACG
CGAGTGGCCAAGTCGGTTGAGCGTGCCAAGCAAAATACGACTACACACTCGGGTTCTGAG
TCTGCCGAAGAGCTGAGAGATCGGGAGGAGCGCGCTCTGGAGGTTTTTGCCAGAGCTGCA
GACCTGGAGGCCCAAGGCAAGCTCAACGACGCCCTCCAGGAGTATTCACGGAGTTTCAAG
ATCCATGACCGGGTCGATTTGCTTTACCGGTCGAGGTTAAAGTACAAGACACCTGCTGGA
TTGACTACAGGATATGCTGACCAGAACGATGCTGAGGACGCGGAAGAGGAACAGGAGCCT
GATGGACCCTGTTTTCTGCTGGAGGCGCCGTCGGAGATTATCATTGACATTTTAGAACAT
CTGGCGATCCAAAACACGCTGGACTTTGTGCATTTTTCGGCTACTTGTAAGCGGGTGTAT
GATTTAGCCAAAACCGAACGCATCTGGCAGCAACTGAGCATGCTGAGCTTTCCAGACCAG
GTCATGAGTGAGGAATATCGACAGTGGCTCTTGAGTGGTGGTCAAGAGACGGGGGAGGAC
GACACAGAAGAACAGGAGCTGAGTCGACAACTGGCAATGGTTTCCCTCACAGACCCAGAA
CAGCACATTTGTGATACCCTCTACGCCTCGTCATGGCATTATATGTATCTCACGCGGCCG
CGGTTACGATACGATGGAGTCTATATCGCCAAATGTTCATATATTCGGCCTGGAGGTACC
TCAAACATGACTCAAGCATGGAACACACCTATGATTTTGGTGGAGTACTACAGATATATT
CGGTTCTTCCCTGGAGGCAAGTGTTTTGTGATGCAAAAGACAACCCACCCAGAAGAAGTG
GTCTACACCTTTGGACAGGATATTCCCCAGACTCGCAGATCAAGACGAAAGGGTAATCCA
GAAGATACAGGTGCATGGGCCACGTACAAGATCATGCCCGATCCAGGTACGAACCCCAAC
AACCACTCAGCTATTGCCCTAGTTGAGATTCCAGGATCCACCATTGTCAAGTACTATCTC
AGACTGGGTCCAGCCTTGAGCAAGAAGGCGTTTGATGAAGGTACAGATCTGGAACGGTGT
GGAACCCAATGGAGAAAGATGAAGTGGGAAAAGCTGTCAAGTACTCGGGTGGTTGAGGAT
GACGAAGAGGAGCTGGAGGAGCTGCCGCTGTCAACGAAAAACGAAAAGTCGTTTTACTTT
TCCCGAGTTACTTTCAGAAACCGTGACGTCCACAAGAAGTAGTGTTTGCCTTCCAGGGCC
CCCGGAAGGCTATCTCTACGGGAACTCGTAGAAGATTAGTGAAATTGTACTTGTAGCAAG
TTCATTCCATAACATCAATATAGCATTTTTATTTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E32439g_CDS-001

Protein length: 454 aa.
Product: Conserved hypothetical protein

>YALI0E32439g_CDS-001 MFIKHYFTHHDFDPLLTATAFDVTTMTNLNLAHPSGSFQTRVAKSVERAKQNTTTHSGSE
SAEELRDREERALEVFARAADLEAQGKLNDALQEYSRSFKIHDRVDLLYRSRLKYKTPAG
LTTGYADQNDAEDAEEEQEPDGPCFLLEAPSEIIIDILEHLAIQNTLDFVHFSATCKRVY
DLAKTERIWQQLSMLSFPDQVMSEEYRQWLLSGGQETGEDDTEEQELSRQLAMVSLTDPE
QHICDTLYASSWHYMYLTRPRLRYDGVYIAKCSYIRPGGTSNMTQAWNTPMILVEYYRYI
RFFPGGKCFVMQKTTHPEEVVYTFGQDIPQTRRSRRKGNPEDTGAWATYKIMPDPGTNPN
NHSAIALVEIPGSTIVKYYLRLGPALSKKAFDEGTDLERCGTQWRKMKWEKLSSTRVVED
DEEELEELPLSTKNEKSFYFSRVTFRNRDVHKK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG