YALI0E30987g

Overview

Description similar to uniprot|P41890 Schizosaccharomyces pombe Cut9 interacting protein scn1
Locus type CDS
Locus tag YALI0E30987g

Location

Species Yarrowia lipolytica Positions 3651976..3653059
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1084 (nuc.)
Previous locus YALI0E30965g Next locus YALI0E31009g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E30987g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E30987gYALI0E30987g_mRNA-001YALI0E30987g_CDS-001

Nucleotide sequence

 

>YALI0E30987g
ATGTTTGATGCCCATTGTCACCCAACAGACACTCCTGATACCCTCGATCTGATCCCGAGC
ATGAAAACGGACCTTCTGGCCTGCATGTCGACCAACTTTCAAGATATAGAAAGAGTGGAG
TCGATTGCTGATTGGCCTAAGGTGGTACCTTGTTTCGGATACCATCCTTGGTTCACATGG
AAGGTGTACACGGAAGAAGGATTGGAAGCAAAGGAACATTATAGTCGTGTTTTGGCAGGT
CCCAGAGGCTCTGAGGAGGAACTGCAGGGATTCGTGGCCAGCCAAGAGCAACCAATGCCG
TTCTCCAATTATCTTGATCTCATGAGACAAGGTCTTGAGAAGTATCCTAATGGCATGATT
GGGGAGGCGGGTTTGGACAAGCCGTTTCGGGTTAAGGATAAAGAGGGGGATAAGCTGACG
CCATTTAGAGTGTCTCTTGACCACCAGCGGACGATTTTGGGGCTCCAGTTGCAACTAGCT
GTTGACTATGGGAGACCCATATCTTTGCATGGAGTTCAGTGTCATGGAGCGTTACTTGAG
TGTGTAACCGAGATTCTAAAGAAGAACCCTGGAAAACCCCTGACTGTTTGTTTGCATTCT
TACTCTGGTCCTCCCGACTTTCTGGTAGGCTGGTTCAAGTTGGAAGGCTCCAAGAAGAAG
CCTACCAAGGTACGTGTCTTCGTGTCTGTGAGCAGTGTTATAACCTGCGGACACATCGAT
CGTGAAGGAGACCGCTTCGATCAAAAGTTGGAGAAGATTTCTCCTTTGTTGGCGAAGATT
CCGGACGACCGGCTGCTTATTGAGTCGGATTACTACAAAGCAGGACCTGTTATGGATGAT
CTTATGCAGGAGGTGCTGGATCTAGTTGCTCATGCAAAGGGTGTATCTAAAGCGGGGGCT
CTCGAGATGTTGGACAAGAACTCTCGAGAGTTTTTGGACTACAGACGCGAGTAGGTTGAC
TCATACATGCTTTCCGGTTCATACTTAGCTGTTGTACACTACAACTAATAACTACAGCAG
TAGCTGCTCAGAGCTTGGTTGACATTGAATAACAGTATAACGAACATGCTTTATAGTGAG
ATCT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E30987g_CDS-001

Protein length: 318 aa.
Product: Interacting protein scn1, putative

>YALI0E30987g_CDS-001 MFDAHCHPTDTPDTLDLIPSMKTDLLACMSTNFQDIERVESIADWPKVVPCFGYHPWFTW
KVYTEEGLEAKEHYSRVLAGPRGSEEELQGFVASQEQPMPFSNYLDLMRQGLEKYPNGMI
GEAGLDKPFRVKDKEGDKLTPFRVSLDHQRTILGLQLQLAVDYGRPISLHGVQCHGALLE
CVTEILKKNPGKPLTVCLHSYSGPPDFLVGWFKLEGSKKKPTKVRVFVSVSSVITCGHID
REGDRFDQKLEKISPLLAKIPDDRLLIESDYYKAGPVMDDLMQEVLDLVAHAKGVSKAGA
LEMLDKNSREFLDYRRE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG