YALI0E28600g

Overview

Description weakly similar to uniprot|P39707 Saccharomyces cerevisiae YAR008w FUN4 tRNA splicing endonuclease gamma subunit
Locus type CDS
Locus tag YALI0E28600g

Location

Species Yarrowia lipolytica Positions 3391653..3392507
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 855 (nuc.)
Previous locus YALI0E28578g Next locus YALI0E28622g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E28600g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E28600gYALI0E28600g_mRNA-001YALI0E28600g_CDS-001

Nucleotide sequence

 

>YALI0E28600g
ATGATCCAGATCAAACGCATCAACGACAAGTATCTGGTGTTTAAGGTAGAGGACATCCGG
TTTCTCCGGCAAGAGCATCTCATTGGAGGCACGTTAATCGGTACGCTACCTCAAATCCCC
CAACAGAATGTCTTCTGTGGCCTGCCACTGCAACTGTTCAAGGAAGAGGTGATATTTCTG
ATGAAGAATGGAATTGCAGAGGTTGTGGACGATAGTGCAAGTCATGTGACAGCCCTTACT
TCCCAAACGCCTGAAGATATCGAAAACTACGAAAAACAACGCCATACAGCCCAGCAACTG
CAGATCAAGGAGTATACAGAGGGTATGCTTGAGCGACGTCGGCAGGCTCTTGAGAAGAAG
GGAATGAGCGGGAAGATTGACAAGGAGGTTGTGGTTGCTACTGATAACGCCATATCATAC
GTCACTGATGCTACCACTACAAATGAGACGCTGGAGGGATACAACATGTTCAGCAAGGAG
AATGTGCTGAGCGACCTGCTAGAGCACGTGACTTCGGCTCAGTATTATATCTTCAACTTT
TTGCATTCCCGAGGGTATTTCTTGTCACCTGGCCTGCGGTTTGGAGGCAATTTTTTGGCA
TACCCCGGAGACTCCGTCAGATACCACTCCCATTACATTGCTATTGGCAAGGAGTATGAG
GAGAAATTCCCCATCAAAAGTGTTATTGTTGGAGGAGGGCGTCTTGGAACTAATGTAAAG
AAGTGTCTTGTTCTTGGGGGAGAGAATGACGAGGGTGGGGACAGTGTGTATTGCATTGAG
TGGAGTGGTTTTGGTTAGATGAAGAGTGGGTGACAATGTACATACTATAATGAAAAATGA
TAATAAAAAGCTGAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E28600g_CDS-001

Protein length: 266 aa.
Product: Conserved hypothetical protein

>YALI0E28600g_CDS-001 MIQIKRINDKYLVFKVEDIRFLRQEHLIGGTLIGTLPQIPQQNVFCGLPLQLFKEEVIFL
MKNGIAEVVDDSASHVTALTSQTPEDIENYEKQRHTAQQLQIKEYTEGMLERRRQALEKK
GMSGKIDKEVVVATDNAISYVTDATTTNETLEGYNMFSKENVLSDLLEHVTSAQYYIFNF
LHSRGYFLSPGLRFGGNFLAYPGDSVRYHSHYIAIGKEYEEKFPIKSVIVGGGRLGTNVK
KCLVLGGENDEGGDSVYCIEWSGFG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG