YALI0E27456g

Overview

Description weakly similar to uniprot|P53753 Saccharomyces cerevisiae YNR067C DSE4 Endo-1,3(4)-beta-glucanase, Daughter cell-specific secreted protein that degrades cell wall from the daughter side causing daughter to separate from mother
Locus type CDS
Locus tag YALI0E27456g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 3246012..3247673
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1662 (nuc.)
Previous locus YALI0E27412g Next locus YALI0E27511g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E27456g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E27456gYALI0E27456g_mRNA-001YALI0E27456g_CDS-001

Nucleotide sequence

 

>YALI0E27456g
ATGAGATTCTCTCAGGGCCTTTCTTGGGTTGGTTAGTGCACTAGCGCATGGGCAGGATAC
AAACGAGTTGGAAAAACGCCACGCGCCATGGGTGAACGGAAACCTGTTCGCATCCATCTC
GACTGCAGACCCCTTGGGCATGTTTCCCCGATGAGCACACCTCGTCAAGCTGCCGTCATT
TGTTACAGCTCCCGTATGCATTGGGCTGGAAGTTATGCTGTGGGAACTTCTGCCACTGAT
GACATTGTTCAGGATGGCCTTCGTGGATCTTAAAGCATTAACTTCAAACATGCCGGCTCT
AGCGAAAGGGACAAACCATCGATGTTTGTACTCGAACATCAGATCCAGAGCATGACAGAC
TGCCTGCTGTCTACTCTACTTGGACCATGGCGACCCATGATTCTTCTGCCAAGGGCCAGA
TGCGTGGGTTCATCACCGACAAATTCACAATGGTCGAGCCGTCGTTGCCTCAAGATGTGG
GCTATCTCCCAAAGGCAGTTCTACCCAACTACAAGTCTCCCTCGATGATGCCAATGTTCG
CGTTCGCAGATTATCGCCGATGTTGCCAACCAAGAGAAGCCGCACTCGGACCAATCTTGA
TTCCATGTACTTCTCCAGAAAGGGTCTAGACAGATTTACTCAGATTCTGGTGGTTCTGAA
CGATGTCGTTGGTGATAAGGCATGTGCTCGCGACCTTCTTGGTCGATTGAAGAACGCATT
TACTGTGTTCGTCAATCACAGACAGCAGAATCCACTTGCTTACAACACCCTCTGGAAGGG
CATTGTCTCTACTGCGGGCCTTGGTACGGACTCCCCCGCTGATTTCGGTAACTTACTACA
ATGACCTTCATATCCACTATGGTTATTTTGTTCATGCCGCTGCTATATCGCCAAAGTTGA
TAGAGAGCTGGGAGACGGGAAATGGCTCACTCAGAGAGACAGTGGGTCGATAATCTGGTG
ATAGACTACGCTAACCCCAGTCCTCAGGGTAAGAGCTTTCCTATTCATCGATCTTTCTAC
TGGTGGTCTGGTCACTCGTGGGCTAAGGGCCTGCATCTTAGTGCTGATGGTAAGGATGAA
GAGTCTTCTTCTAAAGACTACCACTCAGTGTATGCCATCAAGCTCTGGGGTAATGCCAAT
GGTAACCAGGCAATGGAGGCCCGTGCCAATCTTCAGCTGGCTATAATGAAGCGTGCCATG
AATACCTACATACTGGTACATGAAGGACAACAAGTGGAACCAGCCCATGAAACATTAAGA
ACAAGGTCCCTGGTATTTCGTTTGAGCACAAAGCTGATCATGCAACGTACTTTGGTATGA
ATCCCGAGTACATTATTGGTATCCATGCTCTTCCCACTACTCCTGTTTCTGCATACATTA
GAGACCCTGCGTTTGTCAGAGACATGGGATCAGCGGCGGGTTAAAAGGTTCATCAACTGG
GTCGATAGTGGGTGGAAAGGTATTCTTCAGCTAGATCGAAGTAAGCTAGATCGGAGAACC
TTCGATTCCCATGTTGCGTATCAGTTTGTCACCCAAGGTTTCCAGCCTCGATGGCTGGAT
CCAGGTAACCTCTCTTACCTGGTCTCTTACTGTACCATGGTTGCTGGGTTGGGAGGCCAA
TAAAATATACAGAACTATTAGAATAAATGAGTACGGTACGAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E27456g_CDS-001

Protein length: 542 aa.
Product: Conserved hypothetical protein

>YALI0E27456g_CDS-001 MRFSQGFLGLVSALAHGQDTNELEKRHAPWVNGNLFASISTADPLGMFPR*AHLVKLPSF
VTSSRMHWAGSYAVGTSATDDIVQDGLRGS*SINFKHAGSSERDKPSMFVLEHQIQSMTD
CLLSTSTWTMATHDSSAKGQMRGFITDKFTMVEPSLPQDVGYLPKAVLPNYKSSLDDANV
RVRRLSPMLPTKRSRTRTNLDSMYFSRKGLDRFTQILVVLNDVVGDKACARDLLGRLKNA
FTVFVNHRQQNPLAYNTLWKGIVSTAGLGTDSPADFGNYYNDLHIHYGYFVHAAAISPKL
IESWETGNGSLERQWVDNLVIDYANPSPQGKSFPIHRSFYWWSGHSWAKGLHLSADGKDE
ESSSKDYHSVYAIKLWGNANGNQAMEARANLQLAIMKRAMNTYHTGT*RTTSGTSP*NIK
NKVPGISFEHKADHATYFGMNPEYIIGIHALPTTPVSAYIRDPAFVRETWDQRRVKRFIN
WVDSGWKGILQLDRSKLDRRTFDSHVAYQFVTQGFQPRWLDPGNLSYLVSYCTMVAGLGG
Q*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG