YALI0E26048g

Overview

Description similar to uniprot|Q06053 Saccharomyces cerevisiae YLR401C DUS3 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
Locus type CDS
Locus tag YALI0E26048g

Location

Species Yarrowia lipolytica Positions 3095673..3097583
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1911 (nuc.)
Previous locus YALI0E26026g Next locus YALI0E26059g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E26048g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E26048gYALI0E26048g_mRNA-001YALI0E26048g_CDS-001

Nucleotide sequence

 

>YALI0E26048g
ATGTCTGACGAGCCCGTGGTCAAGAAAACTAAGGTCGAGGACCTGCCCGACACTATCGTG
GATTCCGTTTACGAAAAACAGCTCGCCGAGGGTCGTGTTCGAGGAGTCGCAAGCATCAAG
CCTGAGTATCTTGTTGCTCGAGCTTCTGCTGATGCCAGAGATGCTCCTCCATCTGTTAAC
GACGATCTCGCCGAGGGCGGCGAGAAGCCAGAGGAAAAGAAGAAGGGTGGCCAGAACAAG
AACCGGTCTTTGAAGCAGCGAAAGGACGCCATCAAAATGTGCTCCAGTGCTCTACAGTTC
AAAGAGGACGGATCTCCCCAGGAGTGTTCATACGGAGACAAGTGCAAGTTCGAGCACGAT
TTGCAGAAGTATCTCGAATCCAAGCCCAAGGATATTGAGGGCGTGTGTCCTGTGTTTGAT
CTGACCGGCCAGTGTCCTCAGGGATACAAGTGCCGATGGTTGTCTTCGCACCGAGACAGT
GAAGGCAAGCTTCTTGTGGACGAGGAGAAGAAGAAGGCCAACGCAGACAACAAGGAGCTT
AACCACGTGTTCAAGCATCTCAACCCTCTGCAGCGAAAGAAGTACGACTTGTCCAAATCC
GATGAGGCCATCAAGCTCATTGATGCTCAGATTGTGCGAGACGAAGACGACGAACAGACC
AAGCTGGAGAAGAAGGAGACTATTGAGATTGACACTGGTCGAATCCGACCCAGTGAAAAG
AAGAAACTCGATCTCAAAGGCAAGTATATTGTTTCCCCTCTTACCACCGTTGGCAACCTG
CCCTACCGACGTCTGATGAAGGACCTTGGTGCTGATGTCACCTACGGAGAGATGGCTCTC
ACTCTGCCTCTGATCCAGGGCCATAAGGCCGAGTGGGCCCTGACTCGATGTCACAGTTCC
GAAGTCACCGAGGGAAACCACTTTGGTGTCCAGGTGACTGCTCCCAAGCACTGGCAGGCT
ATCAAGGCTGCTCAGGCCGTCTCTGAGCTCTGCACAGGCATCTCCGAGATCAACCTCAAC
TGTGGCTGCCCCATCGATCTCGTTTACCGACAGGGAGCCGGCTCTGCGCTTATGGACCAA
CAGGGAAAGACAGCTCGAATCGTTAGAGGTATGAGCATGGTGTCTGGAGATGTGCCCATC
ACTGTCAAGATGCGAACTGGAACCGGTTCCACGCCTACCGCCAAGAAGCTCACCGCCAGA
CTGCTCGCTGAGGGCCAGACAGCTGCTTTCACTCTTCACGGCCGATCCCGAGCCCAGAGA
TACACAAAGCTGGCCGACTGGAACTACATCCGAGAGGTTGCAGACTCTGTGGTCAACACC
CGAGACGATGTCCGGGAGAAGAGCGAGCTTGATGACCACGTCATTTCTCACCCCACTTGG
GTCGTGGGTAACGGAGACTGTTACACCTGGTCTGACTGGCATCGAGCAGTGGATGAGGCT
CATGTCGACTCTGTGATGGTTGCTCGAGGCGCTCTTATCAAGCCCTGGATCTTCGAGGAG
GTCGAGAGCCGTCAGCATATTGACAAGTCGGCCACCGAGCGACTCGAATACTTCCAGAAG
TTTGCCCAGTACGGACTTGAGCACTGGGGATCTGATCAATACGGAGTCAATCAGACTCGA
CGGTACCTGTGCGAGTTCATGTCCTTCACACACAGATACGTACCCTCAGGAATCCTGGAG
TATCTGCCTGCCAAGATGAACGACCGACCGGATTTGTGGAAGGGCCGAGACGAGATGGAG
ACTCTGTTGGGTTCCAGTGACTACCGAGACTGGATCAAGGTGACCGAACGGTTCCTGGGT
CCTGTCGGCGACGAGTTCGAGTTCACCCCCAAACACAAGAGCAACGCCTACCCTACCGAG
AGTGGTTGATGCATGTATATTATAGTAACGATTATAGAAGTATTGGAGGCG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E26048g_CDS-001

Protein length: 623 aa.
Product: tRNA-dihydrouridine synthase [NAD(P)(+)], putative

>YALI0E26048g_CDS-001 MSDEPVVKKTKVEDLPDTIVDSVYEKQLAEGRVRGVASIKPEYLVARASADARDAPPSVN
DDLAEGGEKPEEKKKGGQNKNRSLKQRKDAIKMCSSALQFKEDGSPQECSYGDKCKFEHD
LQKYLESKPKDIEGVCPVFDLTGQCPQGYKCRWLSSHRDSEGKLLVDEEKKKANADNKEL
NHVFKHLNPLQRKKYDLSKSDEAIKLIDAQIVRDEDDEQTKLEKKETIEIDTGRIRPSEK
KKLDLKGKYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCHSS
EVTEGNHFGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALMDQ
QGKTARIVRGMSMVSGDVPITVKMRTGTGSTPTAKKLTARLLAEGQTAAFTLHGRSRAQR
YTKLADWNYIREVADSVVNTRDDVREKSELDDHVISHPTWVVGNGDCYTWSDWHRAVDEA
HVDSVMVARGALIKPWIFEEVESRQHIDKSATERLEYFQKFAQYGLEHWGSDQYGVNQTR
RYLCEFMSFTHRYVPSGILEYLPAKMNDRPDLWKGRDEMETLLGSSDYRDWIKVTERFLG
PVGDEFEFTPKHKSNAYPTESG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG