YALI0E25608g

Overview

Description some similarities with uniprot|O14099 Schizosaccharomyces pombe Zinc finger protein
Locus type CDS
Locus tag YALI0E25608g

Location

Species Yarrowia lipolytica Positions 3037977..3040094
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2118 (nuc.)
Previous locus YALI0E25564r Next locus YALI0E25630g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E25608g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E25608gYALI0E25608g_mRNA-001YALI0E25608g_CDS-001

Nucleotide sequence

 

>YALI0E25608g
ATGGACTACATGCAATTTCCGCCTCTGCCGGTGATCCGTCTGCCGGAGTTTTTGCATCGC
CGGGATGACATGATGCCCGAGGTGTTTCGCAACTGGCTGGATCGCCAGCAGAGAACAGAA
GAGAATGGAGAGGCTCCCGAGCTGGAGGCTCAGCTGGAACAGCAGCAAGGATCGGTGTTG
GCGCGAGCTCGAGAGCGCAGAAACACGCTCCAGGACACCCCCTCCAACGTGCCCGCCGTG
TGTTCCGAGCCAGAGTTGCAGAGCAGCTATCTGCAACGGTGGCGAGAAATGACCGAGCTT
TGGAACGAGAGCAGAGACGCAGTTTTGGGCTCTGATGATGAAACAGCAGGTGCCAGACCG
TCAGCTGTACGACCCGAAGACTACTTTTCCGCTCCAGAAAATCACAGACTGCTAGGAGGG
CCTCTGAACCTGCCGTCTTTTGGAGGACTCAACATGGCCTGGTTCACACGAGGCCGGGAA
GAAAACGGAGAAGCCGCAACAGCCGCAACGGGCTTCCAACAGCTGTTTGTGGATGGAAGA
CACCCGTACGACTTTTCCGCAGCTGAAAGCGATGTCGCGGGAGAAAGCTCTTATGAGTAC
ACCGACGGAGACGAGCAGGAAGGAGAAGTGGTAGAAGCGTCTACGATCTCCAGCGTGCGA
TCTCCAATATTGCCTCCGTCGGAATCGTCTTCAGATGACGAAATGGATATGATTGGACGT
CTTAATTTCGACGGGTTTGATAGACGACGTTTTCAGCCGCCTCGATTCCGACCTTCATGG
AACTTTCATATTCCCTCATTTCCCGTCCGTGGAAACAGTGATCCCGATACCAATGAGGAC
TCCAACACCGACACAGCGGCCACTCCACGAGCCACTCCTAAGCCGGCTGCTCCTCAACGT
ATGATCGCCTACATTCAAAAACTGTGCAAGAGTAGTAGTGATCAGCCCGAAACAGAAGTA
TCACTTCGTCAAAAGATTATGGAGATTCAGAATGCCGACTTTTCCGAACGGGAAAAAGCG
TACATGTTACAGACACTCATGACGCACGATTACTACAGACTACAGCAGGCTGCAAACGAT
GCTCGCCCGACAGCAGAAGCCTCGTCTACAGATAAGCAACCGACTTATCATGACGAAGAG
TTGCAGATTCTGGGCTGCGAACATTACCAACGAGCATGCAAACTGGAATGCAACGAGTGC
AACAAGTGGTACACTTGTCGATTCTGCCACGACAATGTGGAATCCCACACTCTCATTAGA
AAAGACACTCGGAACATGCTGTGTATGTATTGCGGTACGGCGCAGCCAGCAGCTCAAGAC
TGCATGTCGTGCCACAAGTCCATGGCCTCCTACTACTGTGCCATCTGCAAACTGTGGGAC
GATGATCCTGAAAAGTCCATCTACCATTGCAACGATTGTGGCATCTGTCGCATTGGCAAG
GGACTGGGTATCGACTTTTTCCATTGCCAGCGATGCAACGCGTGCATGACGATGGATCTA
CACGGCTCCCACAAGTGCATCGAGCGCTCCACCGACTGCGACTGTCCTATTTGCGGCGAC
TACCTCTTCACATCGACCACTAAGGTCATTTTCATGCCCTGTGGACACGCCATTCACCAG
ACGTGTTGGTACGACCACACCAGAGTGTCGTACAAGTGTCCCACTTGTGCCAAGAGTATT
TTGAACATGGAGGCTCAGTTTCGAATCATGGACACGGAGATTGAAAATCAGCCTCTTCCC
GATCCATATGCCGACTGGCGATCTATTGTCACTTGTAATGACTGTTCTGCCAAGAGTAAC
GTCAAGTTCCACTTTCTGGGTCTCAAGTGTGACAACTGCAAGTCGTACAACACCAACCAA
GTCAAGTTACTCAAGCCAGAGGATGATGTGGTTCAGGAGGTGCGATTACAGTCCCCCGAG
GTGACAGAGGAGGATGCCGAGTTAGCTATTCTGTCTACGGTCGAGAGTGATCGAGAAGGG
GAATAGAGGGGTTACAAACCTAGTCGAGACAGTGGTTAGTGAGAGGATTGATGGTCAATG
GTCGAGTAGGCCTGTGATCGAGTATGAAGCGATCAAGTATGGGGCATATTGCATTTCATT
AATAGCATTATTTAAGCG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E25608g_CDS-001

Protein length: 662 aa.
Product: Conserved hypothetical protein

>YALI0E25608g_CDS-001 MDYMQFPPLPVIRLPEFLHRRDDMMPEVFRNWLDRQQRTEENGEAPELEAQLEQQQGSVL
ARARERRNTLQDTPSNVPAVCSEPELQSSYLQRWREMTELWNESRDAVLGSDDETAGARP
SAVRPEDYFSAPENHRLLGGPLNLPSFGGLNMAWFTRGREENGEAATAATGFQQLFVDGR
HPYDFSAAESDVAGESSYEYTDGDEQEGEVVEASTISSVRSPILPPSESSSDDEMDMIGR
LNFDGFDRRRFQPPRFRPSWNFHIPSFPVRGNSDPDTNEDSNTDTAATPRATPKPAAPQR
MIAYIQKLCKSSSDQPETEVSLRQKIMEIQNADFSEREKAYMLQTLMTHDYYRLQQAAND
ARPTAEASSTDKQPTYHDEELQILGCEHYQRACKLECNECNKWYTCRFCHDNVESHTLIR
KDTRNMLCMYCGTAQPAAQDCMSCHKSMASYYCAICKLWDDDPEKSIYHCNDCGICRIGK
GLGIDFFHCQRCNACMTMDLHGSHKCIERSTDCDCPICGDYLFTSTTKVIFMPCGHAIHQ
TCWYDHTRVSYKCPTCAKSILNMEAQFRIMDTEIENQPLPDPYADWRSIVTCNDCSAKSN
VKFHFLGLKCDNCKSYNTNQVKLLKPEDDVVQEVRLQSPEVTEEDAELAILSTVESDREG
E*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG