YALI0E25223g

Overview

Description hypothetical protein conserved in the Yarrowia clade
Locus type CDS
Locus tag YALI0E25223g

Location

Species Yarrowia lipolytica Positions 3026824..3028362
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1539 (nuc.)
Previous locus YALI0E25112r Next locus YALI0E25229r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E25223g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E25223gYALI0E25223g_mRNA-001YALI0E25223g_CDS-001

Nucleotide sequence

 

>YALI0E25223g
ATGTCTCCCTCGTCAGCGCCACCCAAACGTGCACATCATCCTCCTCTACCACAACACCAT
CCACAAGGTGCTGCTCCGGAAAACGCCTACCAGCCGTCGGTGACTCAGAAACCCGTCAAA
TCAGTTCACGATCTCAACGCGCTGCTGGCCATTGAAATGCAACGAACACGGCGGTACTTC
CGCGACCACCCGACTCTGTCGACCACTCTGTCCAACAACAAGATCCAGGACGTGATTTTG
CAACATCCAGTGACACGTATGTTGGAAGTGCCTCAGGCGGACCTGGACGCCCGCGCCCGA
ACTTTTGACCTGCTGCGAAACGTCATCAAGGCCACCGTCATTGCTCTCAATTATGCCAAA
CACACAATCCAGTCGGCCCCGAACAGCGGTCAGCTGAACTTCAACAAGAATGCATATGTG
CGGGGAGGCGCTCAGCAGTCGACGCTGCAGACGTCGCCTTTAGTGCGGGAACTCGTCACG
TCAATTTACAACGTCCACAAGCAGATGGGTGACGGAGGACCTATGCCACCCCCCAATACG
GTGCCGGTGGTCCACAACAATGACGAAAACGTGCTCATCGACCTCGCCACCATGCTACAG
CGACTCATGCACATGCGCGACGTGCTGGAGGAGCTACTGCTGAGAATCCAGGGTGTGTGC
TGCTACGTCTACTGGAACACCTGGGACTCGGTGTTTGAGATGGTGGCCGAAATCGCTGGA
CTGCAGGAAACAGAGGCCGCAGCAGAGGGGCGACTTTTCAGAGCAGCAGGCCCGGCGGCA
ATGTACAGGCAGCGCAAGAAGCTGGAAAAGAGCCACGCTGAGGAGTCTCGAAGACGGTCT
CAGATCTCAAAGCCCGGAAAAGAACTACCCCGAACACGTGTCAATTTGGCGGCCATCAAG
AAGCTCTTTGAGCTGCAGGAGCCGCCCATTGCACAGAAGCATCTCAATTCGTACAAGGTG
CGGGACTCGTTCCAGGTGGCCAACTTCAACCCCGAAATGATGGCTGACAGTGGCACGGGA
ATTTCTTCGTATTTGCGTCTCCGAACTTTTGGGGAAGACGAGGTAGCCAATGCGTCCATG
AAACAACCTCTGGTTGTAACGGACGACGATGAATCTGCGTCTGTGATCATGCAGCCCACT
CCGGTCCGTTCTGTGGTCTCAGATGATGCATCGTGTTCTCCGCAATCGACGAAAACGGCC
CTGACCTCTGATGACGAGGAAAAAGACCGTACTCGAACGTGGAACGATCTCGTAAACCAC
ATTGACGATCTCAGCGATCTGGACTCCAACTTGTCGCTCTTCTCCCGGATGAAAACCACA
GATTCCTCCCACATGGACTGTAACATGCCCCCCTTGCCGCTGATTGACCAGTCGGAAATC
GACGATCTGCCCATGGAAGACATGTCGCGATATGGCAAGGCTGAGGGCGAGCGGGTGAGT
CTGCACCAGCAGATTCGAATGATGGACGACGAGTAGCGTGCAAAAGTTTGACCCTGTCGG
ACACTATTTATTCAATATCATGTGATTATAGATGAGTAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E25223g_CDS-001

Protein length: 492 aa.
Product: Hypothetical protein conserved in the Yarrowia clade

>YALI0E25223g_CDS-001 MSPSSAPPKRAHHPPLPQHHPQGAAPENAYQPSVTQKPVKSVHDLNALLAIEMQRTRRYF
RDHPTLSTTLSNNKIQDVILQHPVTRMLEVPQADLDARARTFDLLRNVIKATVIALNYAK
HTIQSAPNSGQLNFNKNAYVRGGAQQSTLQTSPLVRELVTSIYNVHKQMGDGGPMPPPNT
VPVVHNNDENVLIDLATMLQRLMHMRDVLEELLLRIQGVCCYVYWNTWDSVFEMVAEIAG
LQETEAAAEGRLFRAAGPAAMYRQRKKLEKSHAEESRRRSQISKPGKELPRTRVNLAAIK
KLFELQEPPIAQKHLNSYKVRDSFQVANFNPEMMADSGTGISSYLRLRTFGEDEVANASM
KQPLVVTDDDESASVIMQPTPVRSVVSDDASCSPQSTKTALTSDDEEKDRTRTWNDLVNH
IDDLSDLDSNLSLFSRMKTTDSSHMDCNMPPLPLIDQSEIDDLPMEDMSRYGKAEGERVS
LHQQIRMMDDE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG