YALI0E24343g

Overview

Description weakly similar to uniprot|A2Q3R1 Medicago truncatula Pentatricopeptide repeat-containing protein
Locus type CDS
Locus tag YALI0E24343g

Location

Species Yarrowia lipolytica Positions 2899115..2901726
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2612 (nuc.)
Previous locus YALI0E24321g Next locus YALI0E24365g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E24343g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E24343gYALI0E24343g_mRNA-001YALI0E24343g_CDS-001

Nucleotide sequence

 

>YALI0E24343g
ATGTTACAGAGGACGTATTGTGGAGTGCCACGGTCGCAACTGGCGCCCAGATTTGCCCGT
TCAGTCACAACAGGAAGATCTGGACAGTCAGCAGGGCCCAACTACTCGGATATTTACCAA
CGAGAGAGTGCCGAGGATCTGGAAGGAGGTCAGGTTGCACACAGTGACGGGCCCATGGGC
GACGATCTACTGCCCAAGACGTCATCTTCGCAGCAGAATATGTGGCGGGTGTTCGAGAAC
AGCAAGGACAAACGGCTGGCTTTTGTCAGCAACGACGCAAAGGCGTCTCCTTACCATTCC
GGTGTGGGAAACAAGACCAAGAACATGACGGTGCAAAAGAACAGAAAGGAGGTGTACGAA
CGGTGCAAGGAGACGGGAGATGCTACGACAGCCATGCAAACCTACAAGATGGCCTTGTCC
AAGGGAGGAACGGCTTCCCTGAGACAGTTTGACCATATCACCATGATGGAAATGTGTCTC
AAGGACCAGAATATACTCATGTTTCTGGTCTTCTTCGCCCAGACAATCAGTGTCGGAGAC
AGCATCAACACGGCCATGGAGCAGGTCAAAAACGCAAGACGTCTCATAATGCAAGAGAGT
AACCAGAGCGTAGCAACCAAGCTGTCTCTGTACACTTGGTGTGTGGCCATGCAGAAGCTG
CTTCATACTTGCGATCTTACACAGTTGACACCAACAGCTACAAACACAGTTATCGCAGAA
CAGACTCTGGCATACTGTGTCCAGAACACCCGAGGCGAGGCTCTGGGAGCCATCATCAAG
CAGTCGCCTTTCAAGGGGCTCGCCTTTTCGCTCATTGAATTGTTTGCAGAGAAGCCCAAA
ATCATCTGTGAGCTCAACAAGGCGATTGACAATGCATCGGAAATGTCAATCACCACGTTC
GGACGTGTTCTGGTGGCTCTTACAGAAACAGGACAGTACGACGCTGCTCTCAAAAAGTAC
AATGATCCCACACAGACAACACTGCTGTGTCGAAATGAGTACGTCGACCACGTGGCTGTC
ATTTACGCGGTCCTGGGCAAGTGGGATCGCTTCTGTGACATTCTTACACAAAAATACGCC
CAGCTGGAGAGCAATACCGACTCAAAGTCGCTTGCCGCTGTTTTAGCACGAGTTCGAGAA
GCTGGAGGAGGCTCCGCTTTGTTGGATTATGTTGATCAGAAGGCCGCTGACTTGTTGCCT
TTCCAAATGGTGATGTGTATGGCTGCTGGAGACTACCCCAATGCAGCCGAAGTCTACAAT
CAGGGATACAAGGAGAGTCTGTATCATTCATCAAAATACGGCCGGAAACTGAGCAGCAAG
AGGAACAGCGATTCTGAGAAGCCTGTCGATCCTTTACTGACCCATCTTCTTCTGCAGGTG
TACGATCATATTTGTGAGCCTCAGGAGTCGATCAAAATCCTTCAAAAGACTCCTGCTGAA
GATATTACTCCGTTGATGTTGAGCAACGCGATCCAGGCGTGTGTTGGAGCCTACTCCCGT
ACCGCTCTTATTCGTTTGATGAAGTTTGTCAAGGAGACTGAAGGAGTCACCCAAGACGTC
AGTGTGGCAAATGCCATCATTCGAGCACTGATGCGACTTGGAGGATGGTCTGAGGCCGTC
ACTGTGTTCAACCATCTTGGGATCAAGGTCGATATCAACTCGTATGCTGCTCTTTTGTCG
GGTCTGGTGTACCACAGGAAATACAACGAGTATTCGTATTTCCTGACCAAGCTGCAACGA
ACCCGAGGTCTGCATTTCACTACGGAGATCTACGGCACCATCATGCAGAGTGCTGTTGCT
CAAAGTCAGATTGACAAAGCCGAACAGCTGTTGTTGGATCTCGAGAAGGCCGTCCCCAAG
GTTGAACTCGCTCATTATCATTACCAGTACCTCATGAGCCACTATACCAACGCCGGCGAG
CCTGCCAAGTCTACGGCTCTTTACCAGCGAATGACAGACCGTGGTATTCAACCGTCTGGA
GCCATTACTCGTAACATGCTGACTAACATCAAGTTGCAATACGACATGGAGGTTCCCGAG
CAGCGAAAGACGGCGCTGGTGGTCATGGAGGCTGCCGCACGTGATATTGTGGTAACCTCC
GATCTGCTCAATCCCGGAGTTATTTCTCCTTTTGTGAGAGAGGCCTTCTGGTACATTGAA
GAGTCTGAAGGTGCTGAGAAGGGGGAAGCCTTGGAAATGATGGCTTCTTTCCTGGCTGCA
TACACAGAAAAGCATGGAGGATCAGAGAGTATGCGGGTTCTTATATGGGTTCTTCAGCTG
GAGTCTCTGAAGTCCGATACGGACTTTGGAGTGGCCGAGTCTTGTTGGCAGCGGTTATTC
GATATTGCCGACATGCGAAACGCACGCAGCGACCACGTGCGAGGTTTCAGACCCACAAAG
ACGTCCAACAAGCATGTCATGATCATGGGCGATGCTCTGGAGATCTATGCCAAGGTGCTA
GACAAGAGTGGAAACTCTGACAAGTTGAAGGATATTCGACAAGCATTCAGGTCGAGACGA
TGGAGACTTCCCTACTCCATGAAGCATTTGAGGTAGGTAGGAAGTAGGAGGATATGTACA
TATTATGAACAACGAACATCATTACCATTAAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E24343g_CDS-001

Protein length: 852 aa.
Product: Conserved hypothetical protein

>YALI0E24343g_CDS-001 MLQRTYCGVPRSQLAPRFARSVTTGRSGQSAGPNYSDIYQRESAEDLEGGQVAHSDGPMG
DDLLPKTSSSQQNMWRVFENSKDKRLAFVSNDAKASPYHSGVGNKTKNMTVQKNRKEVYE
RCKETGDATTAMQTYKMALSKGGTASLRQFDHITMMEMCLKDQNILMFLVFFAQTISVGD
SINTAMEQVKNARRLIMQESNQSVATKLSLYTWCVAMQKLLHTCDLTQLTPTATNTVIAE
QTLAYCVQNTRGEALGAIIKQSPFKGLAFSLIELFAEKPKIICELNKAIDNASEMSITTF
GRVLVALTETGQYDAALKKYNDPTQTTLLCRNEYVDHVAVIYAVLGKWDRFCDILTQKYA
QLESNTDSKSLAAVLARVREAGGGSALLDYVDQKAADLLPFQMVMCMAAGDYPNAAEVYN
QGYKESLYHSSKYGRKLSSKRNSDSEKPVDPLLTHLLLQVYDHICEPQESIKILQKTPAE
DITPLMLSNAIQACVGAYSRTALIRLMKFVKETEGVTQDVSVANAIIRALMRLGGWSEAV
TVFNHLGIKVDINSYAALLSGLVYHRKYNEYSYFLTKLQRTRGLHFTTEIYGTIMQSAVA
QSQIDKAEQLLLDLEKAVPKVELAHYHYQYLMSHYTNAGEPAKSTALYQRMTDRGIQPSG
AITRNMLTNIKLQYDMEVPEQRKTALVVMEAAARDIVVTSDLLNPGVISPFVREAFWYIE
ESEGAEKGEALEMMASFLAAYTEKHGGSESMRVLIWVLQLESLKSDTDFGVAESCWQRLF
DIADMRNARSDHVRGFRPTKTSNKHVMIMGDALEIYAKVLDKSGNSDKLKDIRQAFRSRR
WRLPYSMKHLR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG