YALI0E24211g

Overview

Description similar to uniprot|C4R773 Komagataella pastoris Vacuolar cation channel
Locus type CDS
Locus tag YALI0E24211g

Location

Species Yarrowia lipolytica Positions 2877312..2879695
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 2384 (nuc.)
Previous locus YALI0E24189g Next locus YALI0E24255t

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E24211g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E24211gYALI0E24211g_mRNA-001YALI0E24211g_CDS-001

Nucleotide sequence

 

>YALI0E24211g
ATGTCTCTTCCCGTGTCTCGGTCCATCATTTTGGAGCCGCCCAATGCGTCTCAGACACTC
AAGATCGCCATTCGTCTCAAGGCCATTGTCGACTGTGCAGTGCCAGTGGCCATTGAACAA
AAGTACGTGGACGCCGCCGACTCGCCCATCGTGACCAATGTGCTTGTACGCAAGTGCTTC
GAGGCGTGCGGAGGCACGACCGAACAGTCCAAACGCAAGTTCCAGGGCTGCGTGGTGTTT
GCCCTGCTGACAGTTACCCGATGGTACAATGATCTGGCCGACGACGAGCTGTACGATTCG
ACTCTGTACGGCCAGAGAGCCGAGTGTGCCCAGAGACTGGCGGTCAAGATCATCGACGGA
TGCACCGACGAACGGTACCTGTTTCTGGTCATGTTGGCCAAACGATACACCATCAACCTC
AACGGAATCGTGTCGACCCCGTTCAACGCCCTTGAGATGGCTATTGACCAACACTCGACC
ATTGTCATCTCCTGCAGCGGATTCCAGAGATGCATCAAGTGGATGTGGCGAGGTTGGATC
ATCCAGAGTGGAGAAAATCCCAACGAGTACATCCTCTACAACCACACGGACTGTCCCAAG
TTCTGGACCCATTTCAACCCCGAGCGGGTCAAAACCCCCGAGTACCAGAATCTGCTGCAG
CTGATTGTGTCACTCCTTTATGTTGTGGCATACACCTGGGCGCTAAATGACGGGGGAGAA
CGACCCCTGAGACGATGGAGAACAGGAGAAGTGGTGTTCTACACCATGACCCTGTCTTTC
ATTCTGGACGAGGCCACTAAGCTGTTCCACGTCGGACTGCGCTACCTGTCTTTCTGGAAC
GTGTTCAACAACTCTCTGTACTTCATTGTGTCTGTGTCTTTCCTGATCAAAATATTTGGC
GGGAAAGAGGAACCCTTGCTCGTGGCCAACCAGCTGCTGTCTCGAGCCCTGTCACGTGAT
ATCGACATTATCCCCTTTGTGTCCAACAACCGAACGTCCTACCGACTGCTGGCCTGCTGT
GCTCCGTTTGTCTGGTCGCGGCTGCTGCTCTTTCTGGACACTAAACGGTTCTTTGGAATC
ATGCTTGTCGTGCTGGAGGAACTTATGAAGGAGTCCATTGTCTTCTTCGTGCTGTTGGCC
ATTGTGCTGGCGGGTTTCCTGCAGGCTTTCCTGGGTCTGGATCTCTCTGACGGACGAGCC
GACTCCATCAACATGGTGGTCAATGTCCTCATCCAGACGGTACTTGCATCTCCCGTTTTT
GACTCCTTTGAGAACTTTGCGCCTCCCTATGCCATGGTTCTCTACTACATTTGCACCTTT
GTCATTTCCACTCTTCTGCTGAACATTCTGATTGCGCTCTTCAACACGGCGTACCAGCAT
GTTTGTGATAACGGAAGTGACGAGTTCCTGGCTCTGACTGCCAAGAAGACCTTGTGGTTC
ATTCGAGCTCCCGACGAGAACGTCTTTGTTCCTCCCCTTAACATCATTGAGGTCATTGTC
ACTCCTCTGTCGCTGGTTCTGTCGCGAGAGTCGTACCAATCACTATGTGACAGCATCATG
TATGTCATCTACTTCCCTGTGTTGATTGGAATTGGTGTTCATGAGTCCAAGATGGCCCGT
CGAGTTGCCTACAACCGTCTTCGACATGCTCCAGACGATGCCAATGAAGACGATTGTCAA
TGGGATCTTAGCGACGGCTACGACGATGGCGACGAGGATGCCATTGCCTCTCGAGCCCAG
GTGGTCAACGAGCTGGCGGACACCCCCGACTTTAAGATTGAGGGCTTCTCGTCCGAGAAG
GAGTGGCTCAAGTCGCTCAAGGTGCTCAATCCGTACCAGGTTGAGACGGAGCAGGTTGGA
GTGCGATGGGAGCTCAAGCCTCTCATCAACAAGATTGATACTCTGACTGAGCTGGTGGAG
AAGCTGACCAACAAGGTGGATGAGCAGGATGCCATGCTCAAAAAGAAGACCGATTCCAAA
TAGCATTAATACCACAGGTGGAGAAAGAAACGACAGAGCTGTCGGCGTGCTATAGACCTT
CCGAGATGTATGGTCAGCATTGGTCATACTATATTGGGTTTGTCGAGGTTGACTTACACC
TTCTTAGCGACCCTGTATCCCCACGCCACTCAGGTGCAGGTTCTAGACGATCCAAGCTTG
AGGTGGGAACTTAAGAGGTCTAAAGTCGATGAGGTTTCAATTATAGTCTGTGAGCCAAGC
TCTTCCTTGTGTTGAATGTTGTTTGTATTGTTTTTCGCCAGTTGCAGACAGCTGGAGGTT
GCACGTCAAATGTCCGACTGGACGAGCCTTCAGAAGCACTTGGACTTATTGACTTGTGGG
TAAGTACAAGTATGTACAAGTATCTCTAAGCCTATTGCTCGTAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E24211g_CDS-001

Protein length: 661 aa.
Product: Vacuolar cation channel, putative

>YALI0E24211g_CDS-001 MSLPVSRSIILEPPNASQTLKIAIRLKAIVDCAVPVAIEQKYVDAADSPIVTNVLVRKCF
EACGGTTEQSKRKFQGCVVFALLTVTRWYNDLADDELYDSTLYGQRAECAQRLAVKIIDG
CTDERYLFLVMLAKRYTINLNGIVSTPFNALEMAIDQHSTIVISCSGFQRCIKWMWRGWI
IQSGENPNEYILYNHTDCPKFWTHFNPERVKTPEYQNLLQLIVSLLYVVAYTWALNDGGE
RPLRRWRTGEVVFYTMTLSFILDEATKLFHVGLRYLSFWNVFNNSLYFIVSVSFLIKIFG
GKEEPLLVANQLLSRALSRDIDIIPFVSNNRTSYRLLACCAPFVWSRLLLFLDTKRFFGI
MLVVLEELMKESIVFFVLLAIVLAGFLQAFLGLDLSDGRADSINMVVNVLIQTVLASPVF
DSFENFAPPYAMVLYYICTFVISTLLLNILIALFNTAYQHVCDNGSDEFLALTAKKTLWF
IRAPDENVFVPPLNIIEVIVTPLSLVLSRESYQSLCDSIMYVIYFPVLIGIGVHESKMAR
RVAYNRLRHAPDDANEDDCQWDLSDGYDDGDEDAIASRAQVVNELADTPDFKIEGFSSEK
EWLKSLKVLNPYQVETEQVGVRWELKPLINKIDTLTELVEKLTNKVDEQDAMLKKKTDSK
*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG