YALI0E23342g

Overview

Description weakly similar to uniprot|Q04195 Saccharomyces cerevisiae YDR409W SIZ1 (ohnolog of YOR156C) SUMO/Smt3 ligase
Locus type CDS
Locus tag YALI0E23342g

Location

Species Yarrowia lipolytica Positions 2742731..2744965
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2235 (nuc.)
Previous locus YALI0E23320g Next locus YALI0E23364g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E23342g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E23342gYALI0E23342g_mRNA-001YALI0E23342g_CDS-001

Nucleotide sequence

 

>YALI0E23342g
ATGTTCAATCAGATTCCGTCGACTCCTAGTCCTTTTGTGGTTCCTCCGTCTTCCTACTCC
GCCGCCAACATCAACATCAACACCATGGAGGCGCCTCATTATTTGCAGGGGGCTTCTGAG
GACGTGAAGCAGAAGCATGCGTACATTTCTTCTGTGCTTTCGCGGGGCAAAATGACGGTT
CCCATGCTCAAGAGCGTTCTTAAGAGCCTCAACCTGGGCACGACCGGACTCAAGCAAGTG
CTCAAGGAGCGGCTCATGTACTACGTGACTCAAGTGACGACTACAGACATGTTCTCGCAT
CGGATAACGACCATGTACGATCTGATCAAGAGCGAACTGAATGGAACCGCCAGCCCCGTG
GCAGCCTCGACTAATCGAGGTCCTTACAATACGGTCTTCTACAGCCCACCGCAAGCGCAA
ACGGTGGCTGCCAAGGTGAAGACCATGCCGCCGCAGTCGGACCTCGTGGTCAGCTTACCG
CCGCCACTCAGCTTTTCCAATACGCCATTCTACAAGATCAAAGAGGCGTTACTACCCGGA
ATGATCTTGTCCAAATCAGCCGAACAGAGAGTCACACGCATGGAGTTCAAGCTGCCCGAG
TACTACATCCGCGCCGTCGAGGAGGAAGCCGAGCAACGCAAACAAGGCACGATCTATCCG
AAATACGGCGTTCGGCTTTTTGGGCAGATTCTGCAACCGGAGTGCACCTCCAAAACAGCC
TCGTGCGAGTTTCCCATCGCTCTGCAGCTCAAGGTCAACGATAAGGCCGTGGAGGCCAAC
ACACGGGGTATGAAGAACAAGCGAGGCACTACGGTGCCGCCTGACGTGACTGACCTGATA
AAACCGCAAAAAGCAACCCAGAGATTGGAGACTTATTATTCGCATTGTGCCGAAATCAGA
TACGGAATTTGGGCCTATGTTGTGGAGGCACAGTCCATGACGCAGGTGCTCAACGACATC
AAGACCAGACACATTCTTCGGGATAAACCGCTGGAGATTATTAGGTCGTTCTACAGCGAT
GAAGACGTGGTGGTGGACAATTACCCCCTGAAGCTCAAATGTCCGATCTCCTTCTCTCGA
ATGGAAGTGCCTGTTCGATCTGTGTTCTGCAAACACGTGCAGTGCTTTGACGGCCGGTCG
TTCTTGCAAATGCAGCATCAGGCCGCCCAGTGGCGATGCCCCGTTTGTGACGACCCCATG
TCGTACGCGTCTCTAGCCGTGGATGACTTTATGAGCGAGATTCTGGCCCATGCGCCGGAA
GGGGCTGATAGTGTGTCTCTCTTAAAAGATGGCTCGTACGAGATTCCTCAGGACGATAGT
GATGGGGAAGCCAGTAGTCCTGAACCTGACTGGTTGAAGAAGCGGCATCCTGATCCTCCG
TTGGTTGTGTCCTTGGACTCTGACGATGACGACGATGGAAACAACAACAGCAGCAACGCA
AATGACTCTACTGCCGCCCCTGCGACTGCCTCTCCTACACCGTCTAGACCTCAGACCAAC
GGTACTCATTCCAACGGAAGTGCACGATCCAGTCTTGGAGACACATCTCGCAGCACAGCT
GCCACGTCAGTCACGTCAGCCACACACGCGCCTTTAGAGCTCCCACCACCTGAACAATAC
CAGCATCCTCTTCCTGTGCTTCCTGCTACAGCCAATCAGGCTTCACCCGAGCAACCCCAA
CAATCTCCCTCCTCACGGCCCGAACGGTCTGGAAGCACGCATTCTACATCTTCCATTCCC
GAGCCCAAACGCCGACGAACGTCGCTCGACTTTGCCCTGCCTCCCTGGACCGGCGGCATA
CTGGGTGACGCGTCCGCTTACCCGGACGTGATCACCATGGTGGACGATTCCAGCTCCGAT
AGCACGTCGCCACCGCGGAATCTGCCCACGCTGCCGAAAACGTACTCACACAACGACCTA
GGTCTGCCGTCGTGGGAGTCGGGCATCTTTTCGTCTAAAAATACTAACAAGCTCACTTCA
GCCAGCCCCGACACTGCGGCCACTTCTGTGAGTCCCAACGCCAATGGCAATGGCACTCCT
CTGGGCCGAAGTAATGCCGTCAGACGCGGCCCTCGACCCCAAAAGACCGTCGTAGAGGTC
GTTGATCTTACTTTGTCGGATTAACTGAAGAACGAGCCAGTACATACATCGCGCCGACAC
AGATTACATTGTCGGCATGCTTCTAGCACTAGTGTAATATATCTATACTAACTGGGGTGT
TTCCCCTATGAATGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E23342g_CDS-001

Protein length: 708 aa.
Product: Conserved hypothetical protein

>YALI0E23342g_CDS-001 MFNQIPSTPSPFVVPPSSYSAANININTMEAPHYLQGASEDVKQKHAYISSVLSRGKMTV
PMLKSVLKSLNLGTTGLKQVLKERLMYYVTQVTTTDMFSHRITTMYDLIKSELNGTASPV
AASTNRGPYNTVFYSPPQAQTVAAKVKTMPPQSDLVVSLPPPLSFSNTPFYKIKEALLPG
MILSKSAEQRVTRMEFKLPEYYIRAVEEEAEQRKQGTIYPKYGVRLFGQILQPECTSKTA
SCEFPIALQLKVNDKAVEANTRGMKNKRGTTVPPDVTDLIKPQKATQRLETYYSHCAEIR
YGIWAYVVEAQSMTQVLNDIKTRHILRDKPLEIIRSFYSDEDVVVDNYPLKLKCPISFSR
MEVPVRSVFCKHVQCFDGRSFLQMQHQAAQWRCPVCDDPMSYASLAVDDFMSEILAHAPE
GADSVSLLKDGSYEIPQDDSDGEASSPEPDWLKKRHPDPPLVVSLDSDDDDDGNNNSSNA
NDSTAAPATASPTPSRPQTNGTHSNGSARSSLGDTSRSTAATSVTSATHAPLELPPPEQY
QHPLPVLPATANQASPEQPQQSPSSRPERSGSTHSTSSIPEPKRRRTSLDFALPPWTGGI
LGDASAYPDVITMVDDSSSDSTSPPRNLPTLPKTYSHNDLGLPSWESGIFSSKNTNKLTS
ASPDTAATSVSPNANGNGTPLGRSNAVRRGPRPQKTVVEVVDLTLSD*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG