YALI0E22935g

Overview

Description highly similar to uniprot|P32561 Saccharomyces cerevisiae YNL330c RPD3 histone deacetylase B
Locus type CDS
Locus tag YALI0E22935g

Location

Species Yarrowia lipolytica Positions 2703585..2705004
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1420 (nuc.)
Previous locus YALI0E22913g Next locus YALI0E22957g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E22935g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E22935gYALI0E22935g_mRNA-001YALI0E22935g_CDS-001

Nucleotide sequence

 

>YALI0E22935g
ATGGTATTTACGCAAGAGCCGTTTGACCCCATCACGGTCAAGCCCAACGAAAAAAAACGG
GTGGCGTACTTCTACGACTCGGATGTCGGCAACTACGCCTACGGCGCCGGCCACCCCATG
AAGCCCCACAGAATACGAATGGCCCACTCGCTCATCATGAACTACGGTCTCTACAAGCAC
ATGGAGATCTACCGGGCCAAGCCTGCCACCAAGCAGGAAATGTGCCAGTTCCACACGGAC
GAGTACGTCGATTTCCTGTCGCGCGTCACTCCGGACAACATGGAGCACTTTGCTAAGGAG
CAGGCAAAGTTCAACGTCGGAGACGATTGTCCCGTTTTCGACGGTCTGTTTGAATTCTGC
GGAATTTCCGGCGGAGGATCTATGGAGGGAGCCGCCCGGCTTAACAGAGGCAAGTGTGAT
ATTGCCATCAACTGGGCCGGAGGACTCCATCACGCAAAGAAATCCGAGGCGTCCGGATTC
TGCTACCTCAACGACATTGTGCTGGGCATCATCGAGCTGCTCAGATACCACCCCCGAGTC
CTGTACATTGATATCGACGTGCACCACGGAGACGGAGTTGAGGAGGCTTTTTACACCACG
GACCGAGTCATGACGTGCTCGTTCCACAAGTACGGAGAGTTTTTCCCCGGTACAGGTGAG
CTGCGGGACATCGGAGCCGGAAAGGGCAAAAACTACGCAGTCAACTTCCCGTTGCGAGAC
GGAATCGACGACACAAACTACAAAAACGTGTTCCAGCCCGTCATCAAGGCCATCATGGAG
TGGTACCAGCCCACTGTCGTTGTCCTGCAATGCGGTGGTGACTCGCTGTCGGGTGACCGT
CTTGGATGTTTCAACCTGTCCATGCAGGGTCATGCCAACTGCGTCAACTACGTCAAGTCC
TTTGGTTTGCCGGTTCTGGTGGTCGGAGGAGGAGGCTACACAATGCGAAATGTGTCAAGG
ACGTGGACTTTTGAGACCGGTCTGCTTCTCAACAAGATGGTGGGCCCGGATATCCCCTAC
AACGATTACTACGAATACTACGGACCCGACTATAAGCTCGAGGTGCGACCTTCTAACATG
CAGAATGCCAACTCTCCCGAGTACCTGGACAAGATTCTCACCCAGGTGCTTGTCAACCTT
GGTCGAACCAAGTTTGCACCTTCTGTGCAGATGACCGATGTGCCCCGAGACGCTCCTGAT
GATGGAGATGAAGAGGAGGACTCGGCCAAGGCCAAGGACACTAAGGGCGGCTCCCAGATG
GCCATTGACGAGCAGATTGAGCACCCCAACGAGTTTTACGACGACGATAACCTCGAGGGT
GGAGATGCCAAGGACATCAACAACTTCAAGGACAAGGATGTCGCCATGGAGGACTAATTT
GTATTATATGTAGAAGAATAAATTTATTGTGACTAGCTAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E22935g_CDS-001

Protein length: 459 aa.
Product: histone deacetylase B, putative

>YALI0E22935g_CDS-001 MVFTQEPFDPITVKPNEKKRVAYFYDSDVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKH
MEIYRAKPATKQEMCQFHTDEYVDFLSRVTPDNMEHFAKEQAKFNVGDDCPVFDGLFEFC
GISGGGSMEGAARLNRGKCDIAINWAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRV
LYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRDIGAGKGKNYAVNFPLRD
GIDDTNYKNVFQPVIKAIMEWYQPTVVVLQCGGDSLSGDRLGCFNLSMQGHANCVNYVKS
FGLPVLVVGGGGYTMRNVSRTWTFETGLLLNKMVGPDIPYNDYYEYYGPDYKLEVRPSNM
QNANSPEYLDKILTQVLVNLGRTKFAPSVQMTDVPRDAPDDGDEEEDSAKAKDTKGGSQM
AIDEQIEHPNEFYDDDNLEGGDAKDINNFKDKDVAMED*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG