YALI0E21197g

Overview

Description similar to uniprot|P47013 Saccharomyces cerevisiae YJL134W (ohnolog of YKR053C) LCB3 Dihydrosphingosine 1- phosphate phosphatase
Locus type CDS
Locus tag YALI0E21197g

Location

Species Yarrowia lipolytica Positions 2522242..2524227
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1986 (nuc.)
Previous locus YALI0E21175g Next locus YALI0E21219g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E21197g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E21197gYALI0E21197g_mRNA-001YALI0E21197g_CDS-001

Nucleotide sequence

 

>YALI0E21197g
ATGCAAACTACCGCGCCTACCACTCCGAAGCAAAGCGTTCCCCAGGACCTCTCTGCCGCC
GCCACCACCTCGCCCGACCTGCTGCCGTTTCCCTCGCTGGAGTCCAATCCCCTAACCCCC
GGTAGATCAGATCCCCCACCTGCCAAAAAGGTGCCCACGTCAACGCGTTCCTACTCCTTT
GAAGACTTGCGACCCGAAGCCCAGGAGAGTCTGATGCGAAACAACCTGGCGGAGAAAAAT
GACCTGCTGGAGGTCCACCCCAACGGCAATGGGACCACCAACGGACCCGGAAACGAGTTT
TCCGCGTCGTCACGAACCTCGTCCATACAGTCGTTCCTGGGCAACTACGAAATGCCCCAG
GTCGAGCCCCACAAGGCTGCCGGAAACAAGTCCACAGACCACTACAAGAGCAGAATGTCG
CCGTGGAGATACAGAATGCGGTCGGCCATGCTGCCGCTGATCCGGTGGGAAACCCCCTAC
CTGGCCCAGATCCAAAAGTCGTCTCGAAACATCTGGCTGGACGTCTACTTTGCAATGACC
GCCAACCTGGGAACCCACACCTTCTACGTCATCATGCTGCCGGTTCTCTTCTGGTTTGGC
CAGGCTGACATGGCCCGGGGTCTCGTGTTTGTGCTGGCCTACGGAGTCTACGTGTCTGGA
GTCATCAAGGACCTGCTGTGTCTGCCCCGTCCCCTGTCCCCTCCTCTCCATCGAATCACA
ATGTCCGGATCGGCCGCCCTGGAATACGGTTTCCCCTCCACCCACACCACTAACGCTGTT
TCCGTGACCCTTCTTTTCCTCCAGAAACTCTACGAGTGCAAAGACAACCTGTCGTCCTTC
TCTTTTGAGTCTCTCCGGGCCCTGTGTGTGCTCTATGGAGCCTCCATCATCTGTGGACGA
ATTTACTGCGGCATGCACGGCTTCCTCGACGTCATTTCGGGCTTTCTTCTGGGAGCTCTT
CTGTGGTGGATCCGGTTTGCCTTTGGAGACCTCATGGACGCCACCACCACTGCCGAGGCT
CCCTATGCGCTGTTGGCCATTCCCCTGGCGCTCCTGCTGGTACGAGTCCACCCCGAACCT
GTGGACTCGTGTCCCTGTTTCGATGACGGAGTGGCCTTCATGGGAGTCATCATGGGCCAG
GATGTCGGTATCTGGCTCTTTGGAAAAACACAGTACGCGACGTCTGTCCCCCTGCGAGGA
GCTATTGCCTACAACTTCCAGGACATTGGCATCATCAAGTCTTTTCTGCGAGTCGTTGTC
GGCATCATGCTGGTTCTGGTGTGGCGAGCTGTCGCCAAGCCCATGATGCACACCTACTTG
CCTCCATTCTTCCGAATCATTGAGCGAGTAGGTCTGTCCATGCCACGACGTTTCTTCCTG
TCTGCTTCCGAGTACAAGGATGTTCCTGGCCAGATTCCCGACTCCACCCTGATCGAGCCC
CACGAGATTCCCTCTCTGATCCACAAGCTGGGCCACGCTCGAAAGGATTCTGTTGGTCCC
CAGTCCACTGCCGATGTTATTGAGTCCATTGCCTACGCCGAGTACCAGCGTCAGCGACAG
GACAAGAAGCTGGGTGTGGACGATGATGCTCCTTACCCCGACGCCGAGGGTGTCAGCTAC
CGAGGAGACAAGACCTCAAAGATGGACGAGAAGTGTGGCCACTCGCACGGACATGATCAG
GACGCCGAGGACGAACTTTTTGCCTCCATTCAGCCTCCTCGAGTCCGATACGATGTCGAG
GTAGTTACCAAGCTCATTGTCTACTCTGGTATCGGCTGTCTGGTCATGTTCTGCGGCGTT
GTGTTCCAGGTTGTGGGTCTGGGAGTCACCGCCGAGCACCTGACACATACTGCTGCCAAG
GTTGTCGGTGAAGCCACTGAAAAGATTCTCTAAGGTACAAGGGTAGAAGGAGGTCTCTGG
AAAGGTCTGCAAGTATCAGATCATGAAAAAATTAGCATATTTACTGAATGAATTTATTGA
AAGAAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E21197g_CDS-001

Protein length: 631 aa.
Product: Dihydrosphingosine 1-phosphate phosphatase, putative

>YALI0E21197g_CDS-001 MQTTAPTTPKQSVPQDLSAAATTSPDLLPFPSLESNPLTPGRSDPPPAKKVPTSTRSYSF
EDLRPEAQESLMRNNLAEKNDLLEVHPNGNGTTNGPGNEFSASSRTSSIQSFLGNYEMPQ
VEPHKAAGNKSTDHYKSRMSPWRYRMRSAMLPLIRWETPYLAQIQKSSRNIWLDVYFAMT
ANLGTHTFYVIMLPVLFWFGQADMARGLVFVLAYGVYVSGVIKDLLCLPRPLSPPLHRIT
MSGSAALEYGFPSTHTTNAVSVTLLFLQKLYECKDNLSSFSFESLRALCVLYGASIICGR
IYCGMHGFLDVISGFLLGALLWWIRFAFGDLMDATTTAEAPYALLAIPLALLLVRVHPEP
VDSCPCFDDGVAFMGVIMGQDVGIWLFGKTQYATSVPLRGAIAYNFQDIGIIKSFLRVVV
GIMLVLVWRAVAKPMMHTYLPPFFRIIERVGLSMPRRFFLSASEYKDVPGQIPDSTLIEP
HEIPSLIHKLGHARKDSVGPQSTADVIESIAYAEYQRQRQDKKLGVDDDAPYPDAEGVSY
RGDKTSKMDEKCGHSHGHDQDAEDELFASIQPPRVRYDVEVVTKLIVYSGIGCLVMFCGV
VFQVVGLGVTAEHLTHTAAKVVGEATEKIL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG