YALI0E17853g

Overview

Description some similarities with uniprot|Q8NIS5 Neurospora crassa Related to traf5 protein
Locus type CDS
Locus tag YALI0E17853g

Location

Species Yarrowia lipolytica Positions 2106643..2108013
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1371 (nuc.)
Previous locus YALI0E17831g Next locus YALI0E17875g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E17853g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E17853gYALI0E17853g_mRNA-001YALI0E17853g_CDS-001

Nucleotide sequence

 

>YALI0E17853g
ATGGAACCTCTAGCAAGAACGCTGCCGCCAGGGGACGAAAACATCACCCTGGACTACTGG
TCGCTCGAATACATGGACCTGCCGGAGCAACTGTCATGCCCAGTGTGCACCTGTGGATTC
GTGACTCCATACTCCACAAAGTGTGGCCACACCTTCTGCCGGCTGTGCATTCTGTCTACA
ATGCGTGTGGCGGACTCGGGCAACCGCTGTCCCATTTGCCGCAGCCAAATCGACCCAGAA
ACGCTACAGCCAGCGCCCCTGGTGCTGGTTGATCTGGTGAACGAGCTGCAGGTCAAGTGC
CCGTTCACAAACCGAGGCTGTGCACATGTGGGGCCCCGAAGCCAGATGGAAATGCACTGC
CGTCAACAGTGCGACTATGCACAGGTCCCATGTCGCGGCAAGACGGAAGAGGGGACAGTA
TGTGGCGAACTGGTGCATCGACGCTATGTGGCGGAAGAACATATCAAGGAGTTGCAACAG
CGTCTGCCGGGCGTTACGTGTGTGCATACCAAGGTCACGTGCTTGCAAGGATGCGACGTG
GAAATGCCCTTCATTGCTTACATTGATCACTGCAAACAGGAGTGTACAGAGTCACATTTG
AGCTGTCTATTCTGTCAGGAGACAATCACCGCACAGCTACATGACGATCACATGTCCGAG
TGTTCGGAACGACCCATTAGTTGTCCGGCCGAGAAGTTTGGGTGTCGATGGGAAGGTGCA
AGACGTCTGAGCCACATTCATACAGCTTCCTGCACGTATTCTCAGCTGGCACCTGTTTTG
GAAGCCCAGGAGGAAAAAATTGAAGGCCTCCGACACGAGAACCAGGCGCTACGGTATCGC
CTAGATCGTCTGGATCTCCAGCAGTCTGCAGATGCGGGCTTTGAGCTGCTTCCCAGTGTC
ACGCGAGACGATCTACAAGGTGTGCGAACTGAGTGTGACAAGATGAGAGGCGACATCCTG
GCCATCAACCAGTTGCTGGCGGACTACGAGGTGAACACGTCGATGCAGACGATGCGGGAA
AACATGCGGACTCGAGACGACATCCATGCAATTGTGAATGTGGTTTCAGGTCTGCGTCAC
CAGATGCATTTATTGATGACTGAGCGACGTCGGCATTTTGTGGGCCACTCGGTGCCTCCT
CTGGGGACTCCTCCTGTTCCCATGGAGGGCAGTTCATCCGAATGGAGCTCTACTCCTCCA
GAGCTACAGCGTCGAAGCAGCGATCCTACCAGGCAGGAGGTGAAGCTATAGGGCCATAGG
GGAGGGGTATTTGGTCAAGGTATTTATCAGCATGTTGTACGTGGCAAGAGGTGTCACGCA
CAGCCAATTATAAGTGAATGAATTATTCATCCAGGCCCCAGGGGTGGTGGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E17853g_CDS-001

Protein length: 417 aa.
Product: Conserved hypothetical protein

>YALI0E17853g_CDS-001 MEPLARTLPPGDENITLDYWSLEYMDLPEQLSCPVCTCGFVTPYSTKCGHTFCRLCILST
MRVADSGNRCPICRSQIDPETLQPAPLVLVDLVNELQVKCPFTNRGCAHVGPRSQMEMHC
RQQCDYAQVPCRGKTEEGTVCGELVHRRYVAEEHIKELQQRLPGVTCVHTKVTCLQGCDV
EMPFIAYIDHCKQECTESHLSCLFCQETITAQLHDDHMSECSERPISCPAEKFGCRWEGA
RRLSHIHTASCTYSQLAPVLEAQEEKIEGLRHENQALRYRLDRLDLQQSADAGFELLPSV
TRDDLQGVRTECDKMRGDILAINQLLADYEVNTSMQTMRENMRTRDDIHAIVNVVSGLRH
QMHLLMTERRRHFVGHSVPPLGTPPVPMEGSSSEWSSTPPELQRRSSDPTRQEVKL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG