YALI0E17391g - PBN1

Overview

Description uniprot|Q6C5K1 Yarrowia lipolytica YALI0E17391g PBN1 Protein required for proper folding and/or the stability of a subset of proteins in the endoplasmic reticulum, putative
Locus type CDS
Gene name PBN1
Locus tag YALI0E17391g

Location

Species Yarrowia lipolytica Positions 2052986..2054686
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1701 (nuc.)
Previous locus YALI0E17369g Next locus YALI0E17413g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E17391g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E17391gYALI0E17391g_mRNA-001YALI0E17391g_CDS-001

Nucleotide sequence

 

>YALI0E17391g
ATGCGACGACGAGCTACTATTCTGGCTGATCTTCAGCAGCATGGAGACAAGATCTCCTTC
AAGCCCGGCGACAACAACAAGTCCAAGCTGACCGTGTCCGTCAACGCCCCTCGACAGGAC
CGCTTCTCGGCGCCCGTTTCTAACGCCGATCTCGACGTGTTGAACCACGTGGCCGATGTT
TCAGTGGCATGGGGACGACCCAGTGCTGCCCAGCAGCCCGTGCTGTTTGCAGCTGCTTAC
GAGCCCGGTCTGCACGTGACCGTGGTCAAGAAGCAGGCGTCGGAGCCCCGCAAATGGGGC
GAGGAGAAGCCCTCTGAGGCTGCTCCTGAGCTGGTGCACGTGGCCAAGTTCCTGGAGGAG
CAGCTTGGTCTGCCTGTGGATCCCAAGACCTTCATCGAGTCGCGATCCGACTACACCTAC
TACGACCCTCTTGTCGGTCCCGAGGCATTTGGCCACTTTGTGGACAAGCACTCTGCCTGT
TCCGATGAGTCCGAGGAGTTTGTGAATGACCTGGACACTTTCAACTACGCCCAGAGTGCG
TCTTTCCACATTGATCACGACAAGAAGGAGCTGGTGACAGAGGTGACCATCCCCGATCTC
GAGCACTACTTCAACCAGAAGAAGCAGCACATTTCGCGGGCGTGCAAGAACGACCGTCTG
GAGGTCGGGATCTTCGATCTCAACAACCTGGCCACTTCCTACGCCTTTCGAGGAGTTGCC
GAGCTCAAGGGCCTGCTCCATGACTCTACCAAGGAGAAGCCCCAAGAGACCTTCCTAGTG
ATCGAGCCTCGACACAACATCGGTGCTGGATCTGTGTCTGTGGACTTTGAGCGTCCTGTT
GGTCTGCATCCCAAGTCGGAGCTCAAGCTGAGACACATTGCCATTCCTACCGATCACAAT
GACGAGAACGATGGAGTCAAACACTGCAGACTGTTTGCCAAGTACTCCGCCCCCTCTTCT
ATCTTCTTTGACAAGTATCAGCTTGCGGACCTCGAGAGAACCACCTCTGAACACCCCAAC
GGTCAAGGACGTCTTCTTGCGCTGTGGGGAGAAGCCGATCTTGAAGAACCCCGTTACCAC
ACCGAGGGCTGGGGCTCCGAAGCTTTGGTTGAGATCTTCCCCATCACTGATGCTCCCGAG
GGAACCCCCTTCAACCTCAACTTCACTCTTCCTCTGCATCTGCGGTACGAGGAGCCCAAG
GAGGGAGAGACATACGAGCCCAACGAGGCCCCCTGGCCCCTGGTGTTTTGGGTCTGTGCA
GAGACCGATGAGCAGTTGGCCAACTTCAAGCAATCGCCCTTTGACGTGACCCACAACTCG
TATATGCGTCTGTTCCCGGAGGGAGTGTCTTACCACCATATTGGACCTCGAGAGGCCAAT
GGACGAGGATTCCCTCTTCTGTCCACGTCTTGGGGAACTCCCGTGGCTGACATTGATCGG
TTTGCCGCCGTCAGAGACTACACTTCTATCATGATGGTAGCTGGTTTCCTTATGGTCACC
ATTGCTATTCTGCGAAAGGTGTTCCGAGGTAAGGCTATGAGTGAGGAGTTGAAGGAGAAG
AAGGAGCAGTAGACGTGAAGACGTGGCCCGACAGTCTATCAGCTAAACAGGCCTGGATCT
ACTTGGGTTTAGTTGTATGAGTCCGTACTACTAGAAAGGATTATTGTATTTAAGAGTAAT
ATTTGATTGATAAAAAGAATC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E17391g_CDS-001

Protein length: 524 aa.
Product: Protein required for proper folding and/or the stability of a subset of proteins in the endoplasmic reticulum, putative
Gene: PBN1

>YALI0E17391g_CDS-001 MRRRATILADLQQHGDKISFKPGDNNKSKLTVSVNAPRQDRFSAPVSNADLDVLNHVADV
SVAWGRPSAAQQPVLFAAAYEPGLHVTVVKKQASEPRKWGEEKPSEAAPELVHVAKFLEE
QLGLPVDPKTFIESRSDYTYYDPLVGPEAFGHFVDKHSACSDESEEFVNDLDTFNYAQSA
SFHIDHDKKELVTEVTIPDLEHYFNQKKQHISRACKNDRLEVGIFDLNNLATSYAFRGVA
ELKGLLHDSTKEKPQETFLVIEPRHNIGAGSVSVDFERPVGLHPKSELKLRHIAIPTDHN
DENDGVKHCRLFAKYSAPSSIFFDKYQLADLERTTSEHPNGQGRLLALWGEADLEEPRYH
TEGWGSEALVEIFPITDAPEGTPFNLNFTLPLHLRYEEPKEGETYEPNEAPWPLVFWVCA
ETDEQLANFKQSPFDVTHNSYMRLFPEGVSYHHIGPREANGRGFPLLSTSWGTPVADIDR
FAAVRDYTSIMMVAGFLMVTIAILRKVFRGKAMSEELKEKKEQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG