YALI0E16346g

Overview

Description highly similar to uniprot|O13426 Candida albicans Serine hydroxymethyltransferase, cytosolic
Locus type CDS
Locus tag YALI0E16346g

Location

Species Yarrowia lipolytica Positions 1941995..1943822
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1828 (nuc.)
Previous locus YALI0E16324g Next locus YALI0E16368g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E16346g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E16346gYALI0E16346g_mRNA-001YALI0E16346g_CDS-001

Nucleotide sequence

 

>YALI0E16346g
ATGTCTTCGTACGCCCTTTCCAACAACCATAAGGATGTGAGTAACAGCGATGAGGAATTG
TCTGTGCACAAGAGACACACAACCGCAGAATCGCCCCGCAACAGAACCGGTGTTATGTGT
AACCTATTGATGACACCGTGACACGGACACGTCGTAACAGTGCAAATCCAGACGGTACAC
AACAATTGCAATTGCAATTGTGTTTTGTGACCAATTGGTTGATGCTATGAAGGTGCCTGT
AGAGGTGCGATAATGTCTGGTAACGTCTGTGTTCCGGCTGTGGGGCGTTTCTTAAATATA
CACTCACGCCATATCCTCAACACACACACAGTGTAATGACTGGACAAGTGCGACGCACGC
TCAATGACCCATACTAACCCAGCTCATTGAAGCCTCCCTCCACGACCTCGACCCCGAGGT
CGAGGGCATCATGAAGGACGAGATTGACCGACAGAAGCACTCCATCGTCCTCATTGCCTC
CGAAAACTTCACCTCCAAGTCTGTTTTCGACGCCCTTGGATCTCCCATGTGCAACAAGTA
CTCCGAGGGATACCCCGGCGCCCGATACTACGGTGGTAACCAGCACATTGACCGAATCGA
GACTCTGTGCCAGAACCGAGCCCTCAAGGCCTTCGGCGTCACCCCCGACAAGTGGGGCGT
CAACGTCCAGACCCTGTCTGGCTCTCCCGCAAACCTCCAGGTCTATCAGGCCATCATGAA
GCCCCACGATCGACTCATGGGTCTTGATCTGCCCCACGGAGGCCATCTTTCTCACGGTTA
CCAGACCGACAACCGAAAGATCTCCGCCGTCTCCACCTACTTCGAGACCATGCCCTACCG
AGTCGACCTCGAGACCGGCATCATCGACTACGACATGCTCGAGAAGACCGCCATCCTCTA
TCGACCCAAGGTTCTGGTTGCCGGAACCTCCGCTTACTGCCGACTCATTGACTACAAGCG
AATGCGAGAGATTGCCGACAAGGTTGGCGCTTACCTCGTTGTCGACATGGCCCATATTTC
CGGCCTGATCGCCGCCGGTGTCATCCCCTCTCCCTTTGAGTACGCTGACATTGTCACCAC
CACCACCCACAAGTCTCTGCGAGGCCCCCGAGGTGCCATGATCTTTTTCCGACGAGGTGT
CCGATCCGTCGACCCCAAGACTGGTAAGGAGATTCTCTACGACCTTGAGAACCCCATCAA
CTTTTCCGTCTTCCCCGGCCACCAGGGAGGTCCCCACAACCACACCATCACCGCTCTGGC
CGTTGCCCTGAAGCAGGCTGCTGACCCCACTTTCCGGGAGTACCAGGAGCAGGTTCTCAA
GAACGCCAAGGCTCTGGAGACCGAGTTCAACAAGCTCGGTTACAACCTCGTGTCCGGCGG
AACCGACTCCCACATGGTTCTGGTTTCCCTGCGAGACAAGGGCATTGACGGTGCTCGAGT
CGAGACTGTTTGCGAGCAGATCAACATTGCTCTCAACAAGAACTCCATCCCCGGTGACAA
GTCTGCCCTTGTCCCCGGTGGTGTCCGAATCGGTGCTCCCGCCATGTCCACCCGAGGCTT
CGGCGAGGAGGACTTCAAGAAGATTGCCAACTACATCTCGCAAGCCGTCGATCTCGCCAT
TGAGATCCAGCAGGGACTGCCCAAGGAGGCCAACAAGCTCAAGGACTTCAAGGCTGCTGC
CCAGGCTGGTGGCAACCCCAAGATCGAGGCTCTCAAGACCGAGATCTCCAACTGGGCCGG
CCAGTTCCCTCTGCCCGTTTAAGTGGCTGAGAGGAAGTTATTTATGAATTCAACATTTCT
ATATAGTGAAGACAGTATTTGAAAAGAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E16346g_CDS-001

Protein length: 472 aa.
Product: Serine hydroxymethyltransferase, putative

>YALI0E16346g_CDS-001 MSSYALSNNHKDLIEASLHDLDPEVEGIMKDEIDRQKHSIVLIASENFTSKSVFDALGSP
MCNKYSEGYPGARYYGGNQHIDRIETLCQNRALKAFGVTPDKWGVNVQTLSGSPANLQVY
QAIMKPHDRLMGLDLPHGGHLSHGYQTDNRKISAVSTYFETMPYRVDLETGIIDYDMLEK
TAILYRPKVLVAGTSAYCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYA
DIVTTTTHKSLRGPRGAMIFFRRGVRSVDPKTGKEILYDLENPINFSVFPGHQGGPHNHT
ITALAVALKQAADPTFREYQEQVLKNAKALETEFNKLGYNLVSGGTDSHMVLVSLRDKGI
DGARVETVCEQINIALNKNSIPGDKSALVPGGVRIGAPAMSTRGFGEEDFKKIANYISQA
VDLAIEIQQGLPKEANKLKDFKAAAQAGGNPKIEALKTEISNWAGQFPLPV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG