YALI0E15400g - HFD2

Overview

Description uniprot|Q6C5T1 Yarrowia lipolytica YALI0E15400g HFD2 Fatty aldehyde dehydrogenase, putative; uniprot|Q6C5T1 Yarrowia lipolytica YALI0E15400g HFD2 Fatty aldehyde dehydrogenase, putative; uniprot|Q6C5T1 Yarrowia lipolytica YALI0E15400g HFD2 Fatty aldehyde dehydrogenase, putative
Locus type CDS
Gene name HFD2
Locus tag YALI0E15400g

Location

Species Yarrowia lipolytica Positions 1834289..1835962
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1674 (nuc.)
Previous locus YALI0E15378g Next locus YALI0E15433t

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E15400g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E15400gYALI0E15400g_mRNA-001YALI0E15400g_CDS-001YALI0E15400g_CDS-002YALI0E15400g_mRNA-002YALI0E15400g_CDS-001

Nucleotide sequence

 

>YALI0E15400g
TTTGAACACAACGCCAATCATGTCAGAGTTCGATTGGGAGTCAATTTTGCCGGCAACACC
ACTAGGTGAGATCGAGAAGGATATTCAAACCCTACGACAGGGCTTCAGGTCCGGAAAGAC
GCTGGATTTGAACTTCAGGCTTGACCAGATTCGTAAGCTTTTCTATGCTCTCTATGATAA
TGTCGATGCGATCAAAGAAGCAATTCATAAGGATCTCGGACGTCCGGTCTTCGAGACTGA
ACTTTGCGAGATCTCCTTTCAGTGGGGTGAATTCAATAATGTCGTTTCTAACTTGAAGAA
ATGGGCAGCTGATGAGACGGTGAAGGGAACCACCATTCAATACACTCTCACCCGGCCAAA
GATTAGAAAGCGTCCACTTGGTACCGTCCTTATCATATCTCCTTGGAACTACCCATTTGT
TCTGACCATCTCTCCCCTGCTTGCTGCTCTAGCGGCAGGAAATACGGTGGCCCTAAAGTT
CTCCGAAATGTGCCCACATACATCGCTTTTGCTGGGAAAGTTGTGCACAGAGGCACTTGA
TAAAGAAATTTTCAAGGCATTTCAGGGAGGCGTTCCGGTAGTGTCGGAGATTCTCAAGTA
CAAGTTCGACAAAATCATGTACACTGGAAATCATCGAGTTGGCAAGATCATCTTGGACGC
AGCTAACAAATACCTCACCCCCGTTATTTTGGAGCTTGGAGGCAAATCACCAGTCTTCGT
GACTAAGAATTGCCAAAACGTATCTCTTGCTGCCAAGCGTGCTCTGTGGGGTAAACTGGT
CAACGCTGGACAAACATGCGTTGCCCCCGATTACATCATCGTCGAGCCTGAGGTCGAACA
GGAGTTTATCAAAGCTTGCCAGTACTGGGTTGAGAAGTTCTACCGAGGTGGAGTTGACTC
TGATCATAAGGACTTCACTCATATTGCAACACCTGGACATTGGAGACGATTGACATCCAT
GCTTGCCCAGACAGAGGGAAATATCATCACAGGCGGAAATTCGGACGAGAAATCACGGTT
TCTTGCTCCCACAGTTGTTGCGAAAGTTCCTGATGGTGATTCTTTGATGAATGATGAGAT
CTTTGGCCCTATCCTGCCCATCCTGACAGCCAGATCCGTTGACGAAGGTATTCGCTATGT
TCATGAGAATCACGACACTCCCCTGGCCATGTATGTCTTTACTGATAATGCATCAGAAGG
AGAGTATATCCAATCTCAAATCAACTCAGGTGGCCTGATATTCAATGATAGTCTTGTTCA
CGTTGGCTGCGTGCAGGCGCCTTTTGGTGGTGTCGGCCAATCCGGCTATGGGTCTTATCA
CGGCGAAGATTCCTTCTTGGCTTTTTCACACAGGCAGACTTTCATGAAGCAGCCCCATTT
CATCGAACGACCAATGGCGATCAGATATGCCCCCTACACTAGTCGAAAACAAAAGGCTGT
CCAGGGTAGTCTAGCTGCTCCATCTTTTCCTCGAACAGGAAAGGTTGACCGCTCCCTGTT
GGAGCGGATATTTGGTAAGCTATGGTTCTGGGTGATCGTTTTAGGGCTAGGAGCAGCCAG
TTTGAAGTCAGGAATTTTCTTATGATATGATATTTTTACTAACCACAGTTCGCCCAAAGC
TATAAGCGGCCCAACTCCTTTATAATATAGATAAATACAGGTTATCGTCACATC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E15400g_CDS-001

Protein length: 504 aa.
Product: Fatty aldehyde dehydrogenase, putative
Gene: HFD2

>YALI0E15400g_CDS-001 MSEFDWESILPATPLGEIEKDIQTLRQGFRSGKTLDLNFRLDQIRKLFYALYDNVDAIKE
AIHKDLGRPVFETELCEISFQWGEFNNVVSNLKKWAADETVKGTTIQYTLTRPKIRKRPL
GTVLIISPWNYPFVLTISPLLAALAAGNTVALKFSEMCPHTSLLLGKLCTEALDKEIFKA
FQGGVPVVSEILKYKFDKIMYTGNHRVGKIILDAANKYLTPVILELGGKSPVFVTKNCQN
VSLAAKRALWGKLVNAGQTCVAPDYIIVEPEVEQEFIKACQYWVEKFYRGGVDSDHKDFT
HIATPGHWRRLTSMLAQTEGNIITGGNSDEKSRFLAPTVVAKVPDGDSLMNDEIFGPILP
ILTARSVDEGIRYVHENHDTPLAMYVFTDNASEGEYIQSQINSGGLIFNDSLVHVGCVQA
PFGGVGQSGYGSYHGEDSFLAFSHRQTFMKQPHFIERPMAIRYAPYTSRKQKAVQGSLAA
PSFPRTGKVDRSLLERIFVRPKL*

YALI0E15400g_CDS-002

Protein length: 522 aa.
Product: Fatty aldehyde dehydrogenase, putative
Gene: HFD2

>YALI0E15400g_CDS-002 MSEFDWESILPATPLGEIEKDIQTLRQGFRSGKTLDLNFRLDQIRKLFYALYDNVDAIKE
AIHKDLGRPVFETELCEISFQWGEFNNVVSNLKKWAADETVKGTTIQYTLTRPKIRKRPL
GTVLIISPWNYPFVLTISPLLAALAAGNTVALKFSEMCPHTSLLLGKLCTEALDKEIFKA
FQGGVPVVSEILKYKFDKIMYTGNHRVGKIILDAANKYLTPVILELGGKSPVFVTKNCQN
VSLAAKRALWGKLVNAGQTCVAPDYIIVEPEVEQEFIKACQYWVEKFYRGGVDSDHKDFT
HIATPGHWRRLTSMLAQTEGNIITGGNSDEKSRFLAPTVVAKVPDGDSLMNDEIFGPILP
ILTARSVDEGIRYVHENHDTPLAMYVFTDNASEGEYIQSQINSGGLIFNDSLVHVGCVQA
PFGGVGQSGYGSYHGEDSFLAFSHRQTFMKQPHFIERPMAIRYAPYTSRKQKAVQGSLAA
PSFPRTGKVDRSLLERIFGKLWFWVIVLGLGAASLKSGIFL*

YALI0E15400g_CDS-001

Protein length: 504 aa.
Product: Fatty aldehyde dehydrogenase, putative
Gene: HFD2

>YALI0E15400g_CDS-001 MSEFDWESILPATPLGEIEKDIQTLRQGFRSGKTLDLNFRLDQIRKLFYALYDNVDAIKE
AIHKDLGRPVFETELCEISFQWGEFNNVVSNLKKWAADETVKGTTIQYTLTRPKIRKRPL
GTVLIISPWNYPFVLTISPLLAALAAGNTVALKFSEMCPHTSLLLGKLCTEALDKEIFKA
FQGGVPVVSEILKYKFDKIMYTGNHRVGKIILDAANKYLTPVILELGGKSPVFVTKNCQN
VSLAAKRALWGKLVNAGQTCVAPDYIIVEPEVEQEFIKACQYWVEKFYRGGVDSDHKDFT
HIATPGHWRRLTSMLAQTEGNIITGGNSDEKSRFLAPTVVAKVPDGDSLMNDEIFGPILP
ILTARSVDEGIRYVHENHDTPLAMYVFTDNASEGEYIQSQINSGGLIFNDSLVHVGCVQA
PFGGVGQSGYGSYHGEDSFLAFSHRQTFMKQPHFIERPMAIRYAPYTSRKQKAVQGSLAA
PSFPRTGKVDRSLLERIFVRPKL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG