YALI0D27346g

Overview

Description similar to uniprot|P40968 Saccharomyces cerevisiae YDR364c
Locus type CDS
Locus tag YALI0D27346g

Location

Species Yarrowia lipolytica Positions 3631639..3633156
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1518 (nuc.)
Previous locus YALI0D27324g Next locus YALI0D27357t

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D27346g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D27346gYALI0D27346g_mRNA-001YALI0D27346g_CDS-001

Nucleotide sequence

 

>YALI0D27346g
ATGGCACTCCTCAATGCGGCCCCCCAGGCTGACGAATCGCCCGAAGAGGCCCAGCTGGTG
CACAAGCCCGCGCAAAGAAGCACTCTAGCCGACAACACACCGACCGGCCATGCACAGAAG
GAGGCGTTTGACGCATCCACGTTCCGACAGCAACACCAAGATTTCAAAAGCACGGGAGTG
GCGTTAGATCCATCCATCGCCACCCAGGGCCAGCTTGTACACAACCAGAATGTCGGTGGA
GACAATACACAGAACAACCGGCCGTTAAAACGCCACAAAAAGGGAGAGGTGGGTGTCTTG
GAAGGCAAGAAGGCATACAAGGGACCATGGGCAGCATATGACGACGAAGAAAGCACTAGT
GAGGAGGAAGAGGAGGACGACAGCGTGAATGACGTTGAGGACAACACCAATGTTGTCATT
GCAGATGCCGAGACTGAGCCTGAAACCGTCAAGGAGAGCTCTATTCTACATGTCAAGGGC
AAAGACTACCTGGGACGATCTTTCATGCACATTCCCCAAGATTTGGGTATCAAGCTGACA
CGTGATCCTGGGGAGAGCGAGTGGCATGTTCCTACCCGAAAGGCCCATACGTATACTGGT
CACACTGGTGGTGTGAACGCACTACGTTTGTTCCCCAAGGCTGGTCATCTGCTGTTGTCT
TGTGGTAACGACTCTAAAATCAAGCTATGGGACGTTTACCACAAGCGCGAGCTCATCCGC
ACATACTCTGGACACTCGCGTGCTGTTAAAGACATATCTTTTAACAATGATGGTACGAGG
TTCCTGTCTGCATCATACGACAAGAGTGTCAAGTTATGGGATACAGAATCAGGGGAGTGT
CTGGCTCAGTTCTCCACGGGCAAGATCCCCAACGCGGTCAAGTTCAACCCCAACAACAAC
AATGAGTTTCTTGCTGCCATGGCTGACCGTAAGATCATCCATTGGGACATCACAACGAAG
GAGACTATCCAGACGTATGACCATCATCTGGGACCTGTGAACACAATCACATTTGTGGAC
GAGAACCGGAGATTCATGACCACATCAGACGACAAGACGGTGCGAGTCTGGGATCTCCAA
ATTAACGTCCCCATCAAATATATTGCTGACCCTGCTCAGCACTCTATGCCTTCTGTACAG
ATTCATCCCTCTGGCAACCACGTGGCTGCTCAGAGTATGGACAACCAGATTGTGGTGTTT
GCTGCCAAGGACCGGTTCAGACAGAACCGAAAGAAGACCTTCACAGGTGCATCTTCAGCA
GGATATGCCATTGAGGTCAACTTCTCGGCGGACGGCAAATACCTCATGTCTGGAGACACA
GGTGGAAATGCCTATTTCTGGGACTGGAAGACTTGTAAGCTCAAGAGTAGCTTCAAGGCC
CACGATAGTGCCCTTCGGTGCATTGCTGCCCACCCCCAGGAGAGCAGCAAACTGGTTACT
GCAGGTAGAGGCAGTGAGATCAAGCTATGGGAGTAGGAGAAATGTATTTGTACACTAATC
GATATACTACAGTTTCTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D27346g_CDS-001

Protein length: 492 aa.
Product: Pre-mRNA splicing factor, putative

>YALI0D27346g_CDS-001 MALLNAAPQADESPEEAQLVHKPAQRSTLADNTPTGHAQKEAFDASTFRQQHQDFKSTGV
ALDPSIATQGQLVHNQNVGGDNTQNNRPLKRHKKGEVGVLEGKKAYKGPWAAYDDEESTS
EEEEEDDSVNDVEDNTNVVIADAETEPETVKESSILHVKGKDYLGRSFMHIPQDLGIKLT
RDPGESEWHVPTRKAHTYTGHTGGVNALRLFPKAGHLLLSCGNDSKIKLWDVYHKRELIR
TYSGHSRAVKDISFNNDGTRFLSASYDKSVKLWDTESGECLAQFSTGKIPNAVKFNPNNN
NEFLAAMADRKIIHWDITTKETIQTYDHHLGPVNTITFVDENRRFMTTSDDKTVRVWDLQ
INVPIKYIADPAQHSMPSVQIHPSGNHVAAQSMDNQIVVFAAKDRFRQNRKKTFTGASSA
GYAIEVNFSADGKYLMSGDTGGNAYFWDWKTCKLKSSFKAHDSALRCIAAHPQESSKLVT
AGRGSEIKLWE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG