YALI0D25322g

Overview

Description similar to uniprot|B2AMV9 Podospora anserina B2AMV9_PODAN, NIPSNAP family protein; similar to uniprot|B2AMV9 Podospora anserina B2AMV9_PODAN, NIPSNAP family protein
Locus type CDS
Locus tag YALI0D25322g

Location

Species Yarrowia lipolytica Positions 3376190..3377947
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1758 (nuc.)
Previous locus YALI0D25300r Next locus YALI0D25344g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25322g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25322gYALI0D25322g_mRNA-001YALI0D25322g_CDS-001YALI0D25322g_mRNA-002YALI0D25322g_CDS-002

Nucleotide sequence

 

>YALI0D25322g
ATGAACTTCGCCACCCGACAATTCTCCTCCAGTGCTCTGGCGGCAGCCAAACGGCTGCCC
TCGTTCGCAGGCATTCCGTCGGTGGACATGAAGAAATATACACAGGACCTGGGTGAGTAT
CGTAGCAGCGCATGGGTGCACAGGCACCAGATGGAAGAGACGGACAAGAGAGAAAAAGAA
AGAGCAAGAGATGGACAGCGCGAGCGAAAGCAAGACCAAGCGTCGATTTTGCGGTTTTGT
GGTTTTGTGGTTTTGTGGTTTGGGGTTTAATGCGGAGATTGCGGTTGGTGGCGACTCTTT
TGGGCTGTCTGTCGGGAAAACTTCGGGGGGCAGGGGATCTATTATCCGGCCGACTCCTTA
GCGAAAGATGCAAGGTGCGTCTGTGGTGTCGACGTTTCGGAGCAGGGCTTCTTGGCGTGG
TGTCATTTGCGAGATGGGAGGTATATGAAGGCGCAGGATGGCGTGTTTCTCGCTCGTTCC
ATTTGCCCTCTATTACACTACCCTCATTGTCACCACCTACACCACGTCGTTCCCATCACA
TTCACGACAAATTCACCACAGCCTCGACGTCGTCACCATATAACCTCTGTCGTGCCCATC
ATACCCTCAACGCCGTCACTACTTTCTCCGTCGTGCACACTCACCACGTAATTACCACAA
CCCATCGTCACAATATGAAACGAATCACAAACTTCACATCCCGCCTCACCGCGGCGCTCC
CCAAGTTCTCCCCCCTCAGCATCAAGTCCCAGCCGTCTCCCTCCCTCACAGTCGACGAAA
ATAAACCACTAACCCCAGAACAATCGTCTCCCACATACAAGTCGCTCCAGAAGGACTCCC
AGGGCGCCTCCCAGACCGGAGGCTCGGGGCTCTTCAAGTCCTTCCTCTACGGCTCCGAGG
AGGGCAAAAAGGACATGGCCGACCTGGAGCAGTCCTTTTCCAAGGCACTGGTGCGAGGCA
AGTACGTGCACGAGGTTGGTATCCATTCGGTCATCCCTGCCGCCGCCCCCGAGTACCTGG
ACCTCGTCTCCAAGTACTACCCACTTATTGCCGCCAACCCCGAGCACAATGTCAACCTGG
TGGGCTCGTGGAGACACGTGGTCGGTGACCAGGACACGTACACTCACATCTGGGAGTTCA
AGGGCTACCCAGGCTTCCACAACTCCCAGGTCTCCATCCACAAGGACCCGCTCTACATTG
AGTATCTCCAGAAGCTGCGACCGCTGCTGAGATCCCGACAGTCTCATCTCATGCAGGAGT
TCAACTTTTGGGGCGGAACCGCCTCTCCTCGACAGTATGGCGGTATCTTTGAACTTCGAA
CCTACGACCTCAAGCCCGGCAAGCTCATGGAGTGGGAGACATCGTGGAAGCGTGGTCTTG
AGTGCCGAAAGCAGGTCATGGAGCCCGTGGGCGCGTGGTTCACCAACCTGGGTGACATCC
ACCAGGTACGGCACCTGTGGCAGTTTGCTGACCTCGAACACCGACGAATCTCACGACAAA
AGTGCTGGGAGCTACCGGGCTGGTCCGACACGGTCCACGAGACTGTCGAGCTCACTCAGA
AGATGCAGTCCAACATTCTCGTTCCTCTGAGCTTTTCTCCTCTTAAGTAATTAGAGGTAT
AGATCATTTTTGGTATATGAGGATAGAGACGTAAATATATGTCATGTGACGTTATCCGTT
ACATGATTGCGTAAAGTAGTCTGAAGCCATGTGGTTTTTGTAAATACAAGACAACATCTC
CGTTGATTGCCGTTGATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25322g_CDS-001

Protein length: 312 aa.
Product: Conserved hypothetical protein

>YALI0D25322g_CDS-001 MKRITNFTSRLTAALPKFSPLSIKSQPSPSLTVDENKPLTPEQSSPTYKSLQKDSQGASQ
TGGSGLFKSFLYGSEEGKKDMADLEQSFSKALVRGKYVHEVGIHSVIPAAAPEYLDLVSK
YYPLIAANPEHNVNLVGSWRHVVGDQDTYTHIWEFKGYPGFHNSQVSIHKDPLYIEYLQK
LRPLLRSRQSHLMQEFNFWGGTASPRQYGGIFELRTYDLKPGKLMEWETSWKRGLECRKQ
VMEPVGAWFTNLGDIHQVRHLWQFADLEHRRISRQKCWELPGWSDTVHETVELTQKMQSN
ILVPLSFSPLK*

YALI0D25322g_CDS-002

Protein length: 308 aa.
Product: NIPSNAP family protein, putative

>YALI0D25322g_CDS-002 MNFATRQFSSSALAAAKRLPSFAGIPSVDMKKYTQDLEQSSPTYKSLQKDSQGASQTGGS
GLFKSFLYGSEEGKKDMADLEQSFSKALVRGKYVHEVGIHSVIPAAAPEYLDLVSKYYPL
IAANPEHNVNLVGSWRHVVGDQDTYTHIWEFKGYPGFHNSQVSIHKDPLYIEYLQKLRPL
LRSRQSHLMQEFNFWGGTASPRQYGGIFELRTYDLKPGKLMEWETSWKRGLECRKQVMEP
VGAWFTNLGDIHQVRHLWQFADLEHRRISRQKCWELPGWSDTVHETVELTQKMQSNILVP
LSFSPLK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG