YALI0D25146g

Overview

Description similar to uniprot|Q9C467 Emericella nidulans COP9 signalosome subunit 4
Locus type CDS
Locus tag YALI0D25146g

Location

Species Yarrowia lipolytica Positions 3352996..3354602
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1607 (nuc.)
Previous locus YALI0D25124g Next locus YALI0D25168g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D25146g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D25146gYALI0D25146g_mRNA-001YALI0D25146g_CDS-001

Nucleotide sequence

 

>YALI0D25146g
ATGTCCTCCATCTCAAACCGCATTGAGCAGATTAGCAGCTCGAAACCCGGCGCCAAGGAC
TATATCAACTATCTGCACTCGCTGTCGGCCGCCGCCGATCTCATTTCCTACGCCAAAGCC
ATCATCCAAATTCCCGATGGTGCCATTGTGGCTCGCCCGGTGCTGGCGGAGTTTGTCAGC
TACACAAAGGGGTTGGCGGACGCGCGAGAAGAGGTGTTAATCGCCACTCTCGATGTTCTC
AAGGAAAAAACCATCATTTTCGAGGAGCAGGAGTTTCTGGCACGAGAGGCACTGGCCGAA
GTGTACGAGCAGAAAAACGAGTTCACCAAGGCCGCACGAGTGCTACAAGGCATGCGGCTG
GACTCGGGACAACAGCATATCACCGACGACCAAAAAGTAGCCGTGTATGTGCGGATTGTG
CGCATGTTGCTGGAGGATGAAGACGACGCAGGAGCAGAGACTTATCTTAACAAGTGCGCC
CTGCTGATCCACAAGTGCAACGACCCCGCACAAAAGGTGCATTTCAAGCTATCGCAAGCG
AGAATTTTCGATACCCGACGCAAGTTCCTAGACGCTACACGAAAGTACTACGAAATGTCA
CTGGAGGAGGCCGTGGATGCTGACGACAGACTGCAGTGTCTGCTGGCGGCCTCCAAGACT
GCCATTCTGTCTCCCGCAGGGCCCCTGAGACAGAGAGTGCTCACTGCGCTCTACAAGGAC
GAAAGAAGTGTCCAGCTGCCTACGTTCAAGGTCCTTGAGCAGCTGTACGAGAACCGAATT
CTGGACCAGGAGGACGTGAAGCAGTTTGCCGAAATGCTGGAGCCGCACCAGCTGGCTCTC
ATGGGCGACGGAGTGACAGTTCTGCACCGAGCGGTGCTGGAACACAATCTGTTGGCCATT
TCTAGAGTCTTTTCCTGCATCTCTTTTCCCAGAGTTGCAGCCTTGTTGGGCATGGAATTG
ACACAGGCAGAGGACACAATCGCCAACATGATCATTCAGGGCAGACTAAGTGGACGCATT
GATCAGGTGTCGGGATTTGTCTACTTTGATTCGGAGAAGAGCAATCTTAATGTCAGACAG
AAGGCGTTGGTAAGGTTGGATGAGGTAGCAGAGAGAATTGCTGCAACTAGCAGAGATGTT
AGGATTTACTAGCTCTTCTCCAAGTCTTTTCTTCTTTGTTGTGATAGATTACTGGTTCTT
GTGCTAATAAGCATGGCCCTGCCTGACTCGCTCCGCTGACATTGCCAACTAGGAGACGTA
CCAAATACTGGTACTGACTCATGCGTTGATTCCGATGTTAGTATCGGCGCGGATCTGCAT
AAGGACCTGGCATGGGCGGGGTACCCATCTGTCACAACGATACAGACGTTCCTTCGGCTT
ACTAACTGGGATGAGGCTAGCTTGGTAGAGATGGTTGAAAGAGGAGCTACATTTGGTCTA
GAAGTACCTTCCGCAACTACCTCCGCCGTCCTCTGTTGTGGTTATGAAGATACAAAATAG
TCACTGCAATGAATTGGGTGCTAAAAAGCTACAGATGTACGGTACTGCACTGTACCAGTA
CATGCTGGTACTACTGCACTGGGATATATCAAAACATAATAATATTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D25146g_CDS-001

Protein length: 384 aa.
Product: Signalosome subunit 4, putative

>YALI0D25146g_CDS-001 MSSISNRIEQISSSKPGAKDYINYLHSLSAAADLISYAKAIIQIPDGAIVARPVLAEFVS
YTKGLADAREEVLIATLDVLKEKTIIFEEQEFLAREALAEVYEQKNEFTKAARVLQGMRL
DSGQQHITDDQKVAVYVRIVRMLLEDEDDAGAETYLNKCALLIHKCNDPAQKVHFKLSQA
RIFDTRRKFLDATRKYYEMSLEEAVDADDRLQCLLAASKTAILSPAGPLRQRVLTALYKD
ERSVQLPTFKVLEQLYENRILDQEDVKQFAEMLEPHQLALMGDGVTVLHRAVLEHNLLAI
SRVFSCISFPRVAALLGMELTQAEDTIANMIIQGRLSGRIDQVSGFVYFDSEKSNLNVRQ
KALVRLDEVAERIAATSRDVRIY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG