YALI0D23859g

Overview

Description highly similar to uniprot|P53941 Saccharomyces cerevisiae YNL075W IMP4 Component of the SSU processome, which is required for pre-18S rRNA processing
Locus type CDS
Locus tag YALI0D23859g

Location

Species Yarrowia lipolytica Positions 3107295..3108442
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1148 (nuc.)
Previous locus YALI0D23837g Next locus YALI0D23881g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D23859g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D23859gYALI0D23859g_mRNA-001YALI0D23859g_CDS-001

Nucleotide sequence

 

>YALI0D23859g
ATGATCAGAAGACAGGCCCGAGAACGGCGAGAGTATCTCTACCGAAAGTCGCTCCAGCTG
CAGGAGGCGACCAAGATCCAGAAGCGGCAGCAGTTGAAGGCGGCGCTGGCCTCCGGTAAG
CCGTTGCCCAAAGACGTGGCTGACGACGAAGAGCTTCGAAAGACCATTGCGTACGACGAG
TCTGTGCAGGATGAGATTGACGACGAATATAGCGCCATGAGTGGCATCACCGATCCCAAG
GTGGTGGTGACGACTTCTCGAGACCCGTCGACCCGTCTGTCTCAGTTTGCCAAGGAGGTG
AAATTGCTGTTCCCCACTTCTATCCGGCTCAACCGAGGAGGAACCGTGTTGCCGTCGCTG
GTTTCGGCTTGCAAGACGTCTGCTTCATCGGATCTCATTGTTTTGCACGAGCATCGAGGT
GTGCCTACTGCCATGACGGTGTCCCATTTCCCCCATGGCCCCACCGCCTACTTTTCGCTT
CATAACGTGGTTCTTCGACACGATCTGCCCGATACCGGCAACATGAGCGAGGTGCACCCT
CATCTCATCTTTGACAACTTCACCACCGACCTGGGTAAGCGAGTTGTGCAGATTTTGAAG
CATCTGTTTCCTCCCGGAGTGAAGAAGGACTCAGCTCGAGTCATCACATTTGCCAACCGA
GGCGACTTTATCAGTGTCCGGCAGCATGTCTACGTCAAAACCCGGGAGGGTGTTGAGCTT
GCTGAGGTCGGACCGCGGTTTGAAATGAGACTCTATGACCTGAGACTGGGCACTCTGGAG
AACAAGGATGCCGATGTCGAGTGGAGAATGCATGGATTTATGCGAACTGCCAATAAGAAG
GATTACCTTTAAGTGGCAAGACTGAAGGTCTGAGTGGACAAGAGCCGATGAAGGCCTACT
GGACGACTTATTGATCGCTGGAGGAAGTAATATCTTGTCAGCACTTGTGCGGTTATGACA
GCTTTTGGAAAGCAGTTACAGAAATACAGGGAGTTTGATAAAATGTCAAAAAATGAGTCG
GTTTTATCTGAACCACCTTTCTCACGCTGACTCGACATCAGACTGTCCACCGGCTGGCTT
CAACACAATACTGTGTGTTCATACACACTGATAGAAAGGATATAGTATTTATGAGCATAT
TAATAGTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D23859g_CDS-001

Protein length: 284 aa.
Product: Component of the SSU processome, putative

>YALI0D23859g_CDS-001 MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDEELRKTIAYDE
SVQDEIDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGTVLPSL
VSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPDTGNMSEVHP
HLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYVKTREGVEL
AEVGPRFEMRLYDLRLGTLENKDADVEWRMHGFMRTANKKDYL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG