YALI0D21450g

Overview

Description similar to uniprot|O74968 Schizosaccharomyces pombe Small nuclear ribonucleoprotein
Locus type CDS
Locus tag YALI0D21450g

Location

Species Yarrowia lipolytica Positions 2714487..2715318
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 832 (nuc.)
Previous locus YALI0D21428g Next locus YALI0D21472g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D21450g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D21450gYALI0D21450g_mRNA-001YALI0D21450g_CDS-001

Nucleotide sequence

 

>YALI0D21450g
ATGGCATCCATAGCTCCTTGCGAGACGTGAGTACTTTTGATTTGAAGCGAAATGCTGGAT
TCTGATACACAGCTAAGATCCGCGCCTCTACGACCAACTACTAACCCAGAATATACATTC
GCAACATCAACGAGAAGATCAAGATCCCAACCCTCAAAACGACACTGAAGGAGATATGCA
AGGAGTACGGCGACGTGCTGGATGTGGTGGCCCATGGGAATCTGCGACTGAGAGGACAGG
CATTTGTGGTGTTTGATAGCATTGACTCGGCAGAGTCTGCCATCTCAGCGTTGAACAGCA
CCAAGGTGGACGGTCTGAAGGGATCCGTAGTGGAGGTGACATACGCCAAATCCCCCAGTG
ATGCCACGATGGCCAAAAAGGGAGACAAGGAGCTGGACGCCCATGTGAGAGCAAGAGTGG
CTCAGAAGGAGCTCAAACAGCTGTCCGATTCCAACAAACGACGTGCGGAACCTGTCAGAA
CAGCCGAAACGCCGGCAAAGAAGGCCAAGACAAGCACAGAAACCACCTACAACCCCGTGC
ACAAGATTCTGCTGCTCCAGAACCTTCCCAAGTCGGCCTCCCAAGATACTGTGGCTGCTC
TGTTTTCAGATCTGCCCGGCTACGTGGAAGTGCGTCTTGTGCCTGCTCGTCAGGTTGGTT
TTGCCGAGTTTGAGACCGAGGCTCAGGCCGTGGTGGCCAAGGAAAAGAGCCAGGGAGCTG
ACATTGACGGCGAGAAGCTCATTGTCAGCTACGCCAAGAAGTGAAGGGCATGTCAATATT
GTCACACACAAGCTACAGCATTGTATATATTTATAACGTGTATTATACCGGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D21450g_CDS-001

Protein length: 227 aa.
Product: Small nuclear ribonucleoprotein, putative

>YALI0D21450g_CDS-001 MASIAPCETIYIRNINEKIKIPTLKTTLKEICKEYGDVLDVVAHGNLRLRGQAFVVFDSI
DSAESAISALNSTKVDGLKGSVVEVTYAKSPSDATMAKKGDKELDAHVRARVAQKELKQL
SDSNKRRAEPVRTAETPAKKAKTSTETTYNPVHKILLLQNLPKSASQDTVAALFSDLPGY
VEVRLVPARQVGFAEFETEAQAVVAKEKSQGADIDGEKLIVSYAKK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG