YALI0D21340g

Overview

Description similar to uniprot|Q6C9C6 Yarrowia lipolytica YALI0D12276g, pseudogene
Locus type CDS
Locus tag YALI0D21340g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 2703989..2704833
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 845 (nuc.)
Previous locus YALI0D21329g Next locus YALI0D21351g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D21340g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D21340gYALI0D21340g_mRNA-001YALI0D21340g_CDS-001

Nucleotide sequence

 

>YALI0D21340g
ATGAAGGCCAAGGACTTGCTGGTTCTGGCGGTGGCTCTGACGCTGATGGGGGGTTTCATC
TCGTGGATGTCGATGGAGCGCTTCAGCGAGGCGTCAGGGTACGCCCGAGTGGCCCAAAGG
AACCTCTTCGACCGCCGAATCAAAACATACATTTTGACCACGTCTTGTGAAAGACGATGC
GACCATCTGACCAGGTGGATCCCTCAGGGCACTTTTATGTTGGACGCAGACACCGCGGAG
GTGGCCCCAAGGTGCAAGACCCACTCTCAATGGGACTACAAAACCGTGCCGAACATACAA
GTAGGGCGAACCCCCGGTCCCGCGCCTGCAAAAAAGTACAGGTCTCCTGAGAACGACAAA
GTGCGACTCATGAGCTCAAGGACCCTGACCAAAAGTTCCGCACGCCCGAGTTTCAAGACT
GGATGGTTCAGATCGAGGCCAAGTACAGAAACAAGTATGCCCAGACGCTGCGGAACTGTG
TCGAGGGAACCCACGAGCTGTGTATGCTTCTGGAGGACGACATTGTGTCCATCAACAAGC
CCGACGTCAATCTCTTCAGACTGGCGGCCCACACGATCCCGAAATACTCTGGTCCGGAGC
TGTTGTGGGATTGTACCAAGAGAGGTAATGGATGGAGGTCTCGACGTATTGACGGAAATA
AATGCCAGTGTCGAATTGTGCACAGAGACTATGCTGGGTGTCTGGCGGACTATTTTGATA
CGTCCGGAGCGCCTGCGGATATCGCTCTGGCCAGTGGAAAGGCCTATTGTAACATGAAAC
AAAAGTGGTTTCTTCGGGTGCAGCAGCATGTTGGGAGGAAGAGTAGCATGGGTCATGACA
ATTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D21340g_CDS-001

Protein length: 282 aa.
Product: Pseudogene, conserved in the Yarrowia clade

>YALI0D21340g_CDS-001 MKAKDLLVLAVALTLMGGFISWMSMERFSEASGYARVAQRNLFDRRIKTYILTTSCERRC
DHLTRWIPQGTFMLDADTAEVAPRCKTHSQWDYKTVPNIQVGRTPGPAPAKKYRSPENDK
VRLMSSRTLTKKFRTPEFQDWMVQIEAKYRNKYAQTLRNCVEGTHELCMLLEDDIVSINK
PDVNLFRLAAHTIPKYSGPELLWDCTKRGNGWRSRRIDGNKCQCRIVHRDYAGCLADYFD
TSGAPADIALASGKAYCNMKQKWFLRVQQHVGRKSSMGHDN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG