YALI0D19162g - RIM8, PalF, PAL3

Overview

Description uniprot|Q9UVF5 Yarrowia lipolytica YALI0D19162g RIM8/PalF/PAL3 Arrestin-like protein of the Rim plasma membrane complex
Locus type CDS
Gene names RIM8, PalF, PAL3
Locus tag YALI0D19162g

Location

Species Yarrowia lipolytica Positions 2422978..2425665
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2688 (nuc.)
Previous locus YALI0D19140g Next locus YALI0D19184g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D19162g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D19162gYALI0D19162g_mRNA-001YALI0D19162g_CDS-001

Nucleotide sequence

 

>YALI0D19162g
ATGAAATCGGCTTTCAACAAGCTCCGGCCCAACTTTTGGTCGAGGCTGACGCCGTCGTCC
GATGGCGACTACTTTTTCGTCGAGCTGGAAGACGCTCATCGCACCTGGCACCCTGGAGAC
ACGGTTCATGGCAACGTGATTCTGGTGCTATACAAGCCTCAGAGGATAAGCAGTGTGGAT
TTGAGCTTTGCCGGCAACGTGGTGGTCAAGAGCGCGCTGGTCAAGGGCAAGGGAAGCCGC
AGCGTGCTCTTTGAGCAGAAATTGAGGCTCCACGGAACTCCTACGGCAGGTTCAAACTCC
AACACGACACCTTCAAGTGGTAACCACAACAGCCACGTCTCCAACAGCGCCACCAACAGC
AACAGAAACAGCGGCAGTCACATGAGTACGCGAACAAGCAACAGAAACAGCAACAGCCAT
GTCGCCTCCAACACCCCCAGCATGTCCACCTCTCCAACATCCACGTCATCAGGAGTTGCA
GCAACGGCAGACACAACCACAACGATGGACACAAACACAAGCCAAGCTTCTTCGACAGCC
CCAGATACCCTGAACCCGAGCTCCTCTACGGAGTTGTCTCGCACGGCTACCCGACAGTCG
TCTGACGGATCAATATGGAGAAGCGTAGGATCTTCGACGCCTGGAGCAGCCAGCGGGGGA
GTGGCAGACATGATGATGAACTCGGTGACCACCGAACCGGTGCTGAGCTCGCGCATGTCC
ATGCATACCACCAACTCGCATCTCAGTCAAATGTCGCGCGAATCGCATGTCACTACAGCT
TCTCGCGAATCGCACATGTCGCGTGAGTCCAACACGTCCACATCATCCACTTCGGAGGAA
TTGGAGATTGGCGAGCATCGATTTGCCTTCATTCTGGAGATCCCCCAAAAGGGTCTCTTC
AACTCGCTAGAGTTTGAACGAGGGTCGATTTCGTATGTTATTACGGCAGTGGCCAAACGA
CACGGCCCGCTGCCGGCACTGCATGCGAAACGAGTGCTTCAGCTGGTTTGTCCAGTTGAT
GTGGCTCGTTTGCCCCCTCCTAAACCATCTACTCTTTCCGTGGAGATTCAGAAGCGGAAG
AAACAGCAAGGCATCATTACAACAACGCTGGAAGTCGGCCGAGGAGGATACTTGCGAGGC
GAATCTTTCCCTGTCAAGATCACCATCCAACACGTGAAGTGCGTCAAGTGCTTGAGAGGC
CTGGTCGTTACTCTCTGTCGGTTCAGTAAGGTTACTTGTAACGACGATGAGCCGCAGAGT
TTCCGAAAAGATCTCTCGCAGACAGTCTCACCGCTCTACACTGATCCCGTTACCTTCTCC
TCCACAGTGTCAACCACCCTTAGAATCCCTCCTGACGTGTTCCCTACCACCAAGGGACAC
GGCCTGGTCAGTTTCAACTACTGTGTGGAAGTGGTGATTGATCTCGCAGGCAAATGGGAC
CTGGAAGAAGACCGAACGGGTTTCCTTCATACTGACAGACTCAAGCGAAACAAGGGAGTT
GTCAGTCTGTGGACTGAGGTAATTATCGGTACTGATAGAAGAAGATACCGATCCGACAGC
CACGCCACAGCCCATACAAACACCAACCACGTGACCAACCACGTGTCTCAAAATCATGGG
AGTCCCGGCCACGTCAACTTTGGACATGTGCCTTCACCCAGCGGCAGCAGTAACCATGGC
AACGGGCATGGTGCATATGGCGTTGGACACGCATCCCAGTCGTCCTCTCCCGGTAACCAC
AGCAATTACAGTTACCACGGCAACCCCAATCACGGGGCCAGCCATATTAACAATCACGTG
ACTGCTGGATCGAGTCACACGTCTGGTGGTCTTTCGGAAAAACAGCTCATGAAGCTTCGA
GAGGAGGCTCTGCTTCCTTCGGAGCCGGCTGCTATCAGCTCTCCTTCCTTGGACGCGTTT
CCCTCAGCTCCAGAGTATGCTATTGGCGACGAGGTAGCTGGTTCCAGTGCGGGACCTTCA
GCACCTTCTGCGCCAGCACATACCATTGCTGGCGTGGTTGCTTCTGCTCCTCTTACACCT
TCCGACAAGCATGAGAACGAGCTGCTTCGTCTCCAGGGACTTTCTTCCGACCCGTACGCG
GATGAGGATCATGTCCCGCAATACAAGGAGAAGGAGAAAGCTCCTGAGGAGGTGGTTGCC
ATGCAACTGAATGAGCTGGCCAGTGTTCCTCCTATTGAAGGCGAGATTGAGGAAGTGGGT
AACAGTGCAAATGCCCCTTCAGCCCCCGTGATGAATGGCCATGAAGGGGGCTTTTTTGAT
GCTCCCAGTGAGTTCTCAGAGTCCAGTGCTCCTCCCGTTGTTCATGGTCATGTTCATGGA
CATGTTCATGGACACAGCCATTCTAGCACTGGCACCATTGTGAGTGGAGATGCTTCTGCC
TCAGCCCCGGCTCCTACCTCCATTCGCAGCGTTTCTACTGCACCCTCAGACACCCCAACT
GCCCCTCCTGTCATTACGCATGGGTTCACGGGACCTGTTGGCCCTGGAGTGGTGGACCCC
GGCACCAGTGGCACAGCCAGCACGACCGTGGACTCGCTCAACTCCGAAATTAGCTCTGGT
ACACCTGCATCGACCCTGCCAGACACTAACAAGTCGCTTTCTGACAGCGACGATATTTAT
TCTTAGCATAAATGTACATTATAATGAATTGATGATTAGCCATGTCTC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D19162g_CDS-001

Protein length: 882 aa.
Product: Arrestin-like protein of the Rim plasma membrane complex
Gene: RIM8, PalF, PAL3

>YALI0D19162g_CDS-001 MKSAFNKLRPNFWSRLTPSSDGDYFFVELEDAHRTWHPGDTVHGNVILVLYKPQRISSVD
LSFAGNVVVKSALVKGKGSRSVLFEQKLRLHGTPTAGSNSNTTPSSGNHNSHVSNSATNS
NRNSGSHMSTRTSNRNSNSHVASNTPSMSTSPTSTSSGVAATADTTTTMDTNTSQASSTA
PDTLNPSSSTELSRTATRQSSDGSIWRSVGSSTPGAASGGVADMMMNSVTTEPVLSSRMS
MHTTNSHLSQMSRESHVTTASRESHMSRESNTSTSSTSEELEIGEHRFAFILEIPQKGLF
NSLEFERGSISYVITAVAKRHGPLPALHAKRVLQLVCPVDVARLPPPKPSTLSVEIQKRK
KQQGIITTTLEVGRGGYLRGESFPVKITIQHVKCVKCLRGLVVTLCRFSKVTCNDDEPQS
FRKDLSQTVSPLYTDPVTFSSTVSTTLRIPPDVFPTTKGHGLVSFNYCVEVVIDLAGKWD
LEEDRTGFLHTDRLKRNKGVVSLWTEVIIGTDRRRYRSDSHATAHTNTNHVTNHVSQNHG
SPGHVNFGHVPSPSGSSNHGNGHGAYGVGHASQSSSPGNHSNYSYHGNPNHGASHINNHV
TAGSSHTSGGLSEKQLMKLREEALLPSEPAAISSPSLDAFPSAPEYAIGDEVAGSSAGPS
APSAPAHTIAGVVASAPLTPSDKHENELLRLQGLSSDPYADEDHVPQYKEKEKAPEEVVA
MQLNELASVPPIEGEIEEVGNSANAPSAPVMNGHEGGFFDAPSEFSESSAPPVVHGHVHG
HVHGHSHSSTGTIVSGDASASAPAPTSIRSVSTAPSDTPTAPPVITHGFTGPVGPGVVDP
GTSGTASTTVDSLNSEISSGTPASTLPDTNKSLSDSDDIYS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG