YALI0D17930g

Overview

Description highly similar to uniprot|P28777 Saccharomyces cerevisiae YGL148w ARO2 chorismate synthase
Locus type CDS
Locus tag YALI0D17930g

Location

Species Yarrowia lipolytica Positions 2224373..2225635
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1263 (nuc.)
Previous locus YALI0D17919r Next locus YALI0D17952g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D17930g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D17930gYALI0D17930g_mRNA-001YALI0D17930g_CDS-001

Nucleotide sequence

 

>YALI0D17930g
ATGAGCACTTTCGGCACGCTTTTCAAAGTCACCACCTACGGCGAGTCGCACTGCAAATCT
GTGGGCTGCATTGTTGACGGAGTTCCGCCCGGAATGGATCTCGATGAGTCCGATATTCAG
CCCCAGCTGACCCGTCGAAGACCTGGCCAGTCGGCTCTGACCACTCCTCGAAACGAGCGA
GATGCGGTTGCTATCCAGAGTGGAACCGAGTACGGCAAGACTCTGGGTACCCCCATTGCC
ATGCTGGTTCAGAACAAGGACCAGCGACCCCACGACTACTCGGAGATGGACGACTACCCC
CGACCTTCTCATGCCGACTACACCTACCAGGAGAAGTACGGAATCAAGGCCTCTTCTGGA
GGCGGCCGATCTTCTGCACGAGAGACTATTGGCCGAGTTGCTGCTGGAGCTATTGCCGAC
AAGTACCTGGCTGCTGTCAACGACATTGAGATTGTTGCCTTTGTGTCCCAGGTCGGCGAT
GTTTCCATGGACCGATCTCCCAGAAACGAGCAGTGGATTTCCACTCTGGAGGGCGTCACT
CGAGAGGGCATTGATTCCACCGGCCCCATGCGATGTCCCGATCTGGCCCTCGGAGAGAAG
ATGGTCAAGATTGTGGAGGAGCACAGAGACTCGCATGACTCCGTTGGAGGAGTTGTCACC
TGTGTGATCCGGAACTGCCCCGTCGGTCTCGGCGAGCCCTGTTTCGACAAGCTGGAAGCC
ACTCTCGCCCACGCCATGATGTCCATCCCCGCCACCAAGGGCTTTGAGTTTGGTTCTGGC
TTTGCCGGAGCTGCCATGTCTGGATCCAAGCACAACGACATGTTCTACAAGGACGTGGCC
TCCGGCCGGTTCCGAACCCGAACCAACTACTCCGGAGGCGTCCAGGGCGGAATCTCCAAC
GGCGAGAACATCTACTTCAACATTGCCTTCAAGCCCCCGGCCACCATTTCTCAGGAGCAG
GCCACTGCCACCTACGCCGGTAAGGACGGTGTGCTGGCTGCCAAGGGCCGACACGATCCC
AACGTTGTGCCCCGAGCCGTTCCCATCGTTGAGGCCATGGCCGCTCTGGTCATTGCTGAC
GCCCACCTCATTCAGGAGTCCAGAAAGGGCGCAAAGTCCTTTTTCTAAATAAAACGTGTT
AATAGATAGATTGTGTTGGAGGGAGTACAGTAGCTGAGAGACCAGAAAAGTTCATGGTGC
AGCGTCCGAGTGATTAAACAAATTTCTTGTTAATATATAGCCAACAGACTGCATTCAATG
TGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D17930g_CDS-001

Protein length: 376 aa.
Product: Chorismate synthase, putative

>YALI0D17930g_CDS-001 MSTFGTLFKVTTYGESHCKSVGCIVDGVPPGMDLDESDIQPQLTRRRPGQSALTTPRNER
DAVAIQSGTEYGKTLGTPIAMLVQNKDQRPHDYSEMDDYPRPSHADYTYQEKYGIKASSG
GGRSSARETIGRVAAGAIADKYLAAVNDIEIVAFVSQVGDVSMDRSPRNEQWISTLEGVT
REGIDSTGPMRCPDLALGEKMVKIVEEHRDSHDSVGGVVTCVIRNCPVGLGEPCFDKLEA
TLAHAMMSIPATKGFEFGSGFAGAAMSGSKHNDMFYKDVASGRFRTRTNYSGGVQGGISN
GENIYFNIAFKPPATISQEQATATYAGKDGVLAAKGRHDPNVVPRAVPIVEAMAALVIAD
AHLIQESRKGAKSFF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG