YALI0D16203g

Overview

Description similar to uniprot|Q871Q7 Neurospora crassa NCU06710.1 related to cleft lip and palate transmembrane protein 1 (CLPTM1)
Locus type CDS
Locus tag YALI0D16203g

Location

Species Yarrowia lipolytica Positions 2000471..2002490
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2020 (nuc.)
Previous locus YALI0D16181g Next locus YALI0D16225g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D16203g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D16203gYALI0D16203g_mRNA-001YALI0D16203g_CDS-001

Nucleotide sequence

 

>YALI0D16203g
ATGTCCAGCTCCGGCAACCGAGGCAATGGTAGCAGTGCGCGCAACGGCCAGGGGGCTGCA
ACCCCCCGTGAGCCCGACCAGCGAAAGTCGTGGATCCAGAAACTGCTCACCATCGGCGCC
TTTTACCTAGCCATGAACCTGTTCATGCTGTACATGAAGAACCGAAACCAGGACGCCGTT
GCCACCACCGAGGAGCCCGATCTGACCGTGTCCGAGGCAATTTCCGCCGAGAAACTGTAC
GACGAAGCCGCCCCGCCTTTCCCCGAGCAGATGCGAGCTCTGTGGACCGGCAACCAGCCC
TTCACCATCACCGTCCATGTAGTCGATTCCGACCAGCAAATGCGCCTGCCCGTGTGGGAC
CTCGAGCTGACCGGCCAAAACTTTTCCAAGGGCTTCTCTCTGTTTGAAACCCTCGACTTT
ACCCTACCCAAGGCCCTGACCAACAACAACGGCTCCCTGTACGCCCACGTGGCTCTCCAG
CGAAAGGATAGTGATCTGGTGATCAACAAGCGAGTCGATCTGACCTCCTACTTGCCCAAG
AAGAAGGTCGTCCACAAGAAGCTACTGCTCAGCGAAGAGCACGAGGAGGAGGAGGAGGAG
GAAGAGGAGCTACCTTACTTGGAACGACCCCTGGTGCCCAACATTTACCCCAACGTGTCG
ATCGGTGTCATCTACGATCTCGGAAACGGTGTCCCTGCCAGCATGCCTCCTGCAATTTCT
CAGCATATCATCTCTTCTGGTGACCGAGACTCATCCGGTAAGGTCTCGTTCATCTACCCA
ATCGTGTTCAACAACGAGTTCTGGCAGCTCAACTCCAAAATGATGGAGCTTGGAGAGAAC
TTGGCGGGAGAAAAGTTCACCCTACAGCTCAACCTCTACTCCACCTCCTTCTTCTGGTTC
CAAATGTTAACCAACATGGATCATTCCTTCAAAGAACAGGCTAGACAGCAGGGAGGACGA
ACCAGTGAAGTTGAGCAATTGAAGGTAACTCTGCTCGAGTCCAATCCTTACTTGCTTGCA
ATCACCGCGATCGTGTCTGTGTTCCATATGCTGTTTGAGTTTCTGGCTTTCAAGTCTGAC
ATCTCTCACTGGAAGAACAAGACGGATACCATCGGTGTGTCTGTGCGATCCATTATTGCC
AACGTTGTCATGCAGAGTATCATTTTCCTATATCTGATGGATAACAACGACGAGACGAGT
TACATGATCCTGCTGACACAGGGCATGGGTATTCTGGTTGAAGCATGGAAGATCAACAAG
GTGGCTGTCTTCTCTTTCTTCGATCCCCCCAAGGAGCAAAAGAACAAGAAGATTACTAAC
GTTTTCGGACTGGGAATTGTGTACATTCAGGACAGGAATGAACTGTCCGAGATTGAAGAG
CGAACCAAGGAGTACGACTCTATCGCGTTCAAATACCTCTACATTGCGGCCGTTCCCCTC
ATTGGTGCCTATGCAGTCTACTCCGTTATGTATGTGCCCCACAAGAGTTGGTACTCGTTC
ATCATTTCTACTCTGGTTGGTTCCGTCTACGCCTATGGATTTTTGATGTTGGTGCCTTCC
ATCTACATCAACTACAGACTCAAGTCAGTGGCCCACATGCCCCGAAAGGCCATGGTATAC
AAGTTCCTCAACACCTTTATCGACGACCTGTTTGCCTTTGTCGTCAAGATGCCCCTGCTT
CATCGAATTGCCACTCTGCGGGACGATGTAATCTTCTTCGTGTACATCTACCAGACCTGG
GTGTACAGAGTCGACTACACTAGAGTCAACGAGTTTGGTCAGGGAGGAGACGACGAGGCT
GCGGAGATTGATGACGAGAACAAGGACAAGGCCCAGCTCGTTGGACGAGAGGAGGCTAAG
AAGATCAACGAGATCACCGGTACTTCTACTTCTACTGGTGTCGAGGCCCAGGAAGGTATT
CGAAGACGGTAAATAGTAGTTTTTTGCGTAATAAAAGAACATCACCTAGCACGGCGAGAG
TACAGTATGTACAGTACCAGCCGTGAACCTACCAGTTGAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D16203g_CDS-001

Protein length: 644 aa.
Product: Transmembrane protein, putative

>YALI0D16203g_CDS-001 MSSSGNRGNGSSARNGQGAATPREPDQRKSWIQKLLTIGAFYLAMNLFMLYMKNRNQDAV
ATTEEPDLTVSEAISAEKLYDEAAPPFPEQMRALWTGNQPFTITVHVVDSDQQMRLPVWD
LELTGQNFSKGFSLFETLDFTLPKALTNNNGSLYAHVALQRKDSDLVINKRVDLTSYLPK
KKVVHKKLLLSEEHEEEEEEEEELPYLERPLVPNIYPNVSIGVIYDLGNGVPASMPPAIS
QHIISSGDRDSSGKVSFIYPIVFNNEFWQLNSKMMELGENLAGEKFTLQLNLYSTSFFWF
QMLTNMDHSFKEQARQQGGRTSEVEQLKVTLLESNPYLLAITAIVSVFHMLFEFLAFKSD
ISHWKNKTDTIGVSVRSIIANVVMQSIIFLYLMDNNDETSYMILLTQGMGILVEAWKINK
VAVFSFFDPPKEQKNKKITNVFGLGIVYIQDRNELSEIEERTKEYDSIAFKYLYIAAVPL
IGAYAVYSVMYVPHKSWYSFIISTLVGSVYAYGFLMLVPSIYINYRLKSVAHMPRKAMVY
KFLNTFIDDLFAFVVKMPLLHRIATLRDDVIFFVYIYQTWVYRVDYTRVNEFGQGGDDEA
AEIDDENKDKAQLVGREEAKKINEITGTSTSTGVEAQEGIRRR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG