YALI0D11220g

Overview

Description similar to uniprot|P47079 Saccharomyces cerevisiae YJL008C CCT8 Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo
Locus type CDS
Locus tag YALI0D11220g

Location

Species Yarrowia lipolytica Positions 1410243..1411986
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1744 (nuc.)
Previous locus YALI0D11198g Next locus YALI0D11242g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D11220g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D11220gYALI0D11220g_mRNA-001YALI0D11220g_CDS-001

Nucleotide sequence

 

>YALI0D11220g
ATGTCGAATCTCAAGCTACCTACCGCCCCCAATGCGGGCCTGTTCAAGCAGGGATACCAG
ACATCCAATGCCGAGGACGGCGCCGTCCAGCGAAACATCCAGGCCTGTCGAGAAATCACC
GGCATGGTTCGAACCTCTATTGGACCCTGTGGTCGAAACAAGATTGTGGTCAACCATCTT
GGCCGAATCTTTCTGACATCTGATGCCGCCACCATTCTGCGGGAGCTCGAGGTGATTCAC
CCTGCCGCCAAACTCCTGGTCCAGGCCTCCCAGCAGCAGGAGCTCGAGTGTGGAGATGCC
ACCAACTTGGTTCTGACTCTGGCCGGCTCGCTTCTCAACAAGGCCGACGAGCTCATTCGA
ATCGGACTGCATCCCTCCGAAGTGGTCCAGGGCTACGAGCGAGCCAAGGGTCTGGCGCTG
ATGGAGCTGGAGACCATTGCTGCCGAGACCACTGCCAACGCTGAGCTGGCCAACGGAGAC
ACCGCCCAGGCTCTGGTCACCTCGCAGCTGCTGGCTCGAGCCGTCAAGACCGCCGTGGCA
TCCAAGCAGTACGGCCACGAGGCAATCATCTCGCGATTGGTCACCGAGGCTGTCCAGCAT
GTCATGCCCAAGAACATCAAGGCTTTCAACGTGGACGCCATCCGAGTCGTCAAGATCATG
GGCGCCTCTCTGGGCGCATCCCAGGTCATCAAGGGTATGGTTTTCAACCGGGAGCCCGAG
TCCACTGTGAAGAATTGTGGCAAGGCCAAGGTTGTTGTTTTCTCTACCCCTGTCGACATC
TCCTCTACCGAAACAAAGGGTACTGTGCTGCTCAAGTCTGCCCAGGAGATGCTCAACTTC
TCCAAGGGTGAGGAGGCCCAGGTCGAGACCATGGTTAAGAACATTGCCGACTCCGGCGTC
AAGGTGGTCGTCTGCGGCGCTGGTCTCGGAGACTTGCCTCTGCACTACATGAACAGAATG
GGTCTGATTGCCCTTAAGGTTCCCTCCAAGTTTGATCTGCGACGACTGTGCCGAGTGGTT
GGCGCCACTCCTCTCGCTCGAGTCGGAGCTCCCCTTCCCGAGGAGATGGGCACTGTCGAT
GTGGTTGAGACCATTGAGATTGGAGGCGACCGAGTCACCGTGCTCCGACAGGAGGACGAG
GCGACCCGAACCGCGACCGTTGTGGTTCGAGGTGCTACCCAGAACGCTCTCGACGACGTG
GAGCGAGCCATTGATGACGGTGTGTCTGTTGTCAAGTCCATCTCTAAGGATCCCCGTCTG
GTTCCTGGAGCTGGAGCCACCGAAATCCGGCTGGTTTCTACCATTGTGCAGCAGGGCGAG
CGAACCCAGGGTCTCATGCAGCATGCCATCAAGGCCTACGGACAGGCATTTGAAGTCCTG
CCCGAAACTCTGGCCGAGAACGCTGGTCTGGACGCCATCGAGGTGCTTGCCCGACTCTAC
GCTGCTCACTCCGAGGGCCGAAACACCACTGGTGTCGATGTCGACGACAACGACAGCACC
GGCACCTGCGACGCCTCTGCTGCCGATATCTTTGACTCTTACTCCGCCAAGATGTCTGCC
ATCGAGCTTGCGACTGACGTGGCCAACACCATTCTCACAGTCGACCAGATTATCATGGCC
AAGCGAGCTGGCGGCCCCACCATGCCCAAGCAGCAGTCTATTGGTAACTGGGATCAGGAT
GATTAAACGGAGTAGCGGATTGGTATATAAAATGAGTTATAGATGCATGTTTGTGATTGA
GAGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D11220g_CDS-001

Protein length: 562 aa.
Product: Subunit of the cytosolic chaperonin Cct ring complex, putative

>YALI0D11220g_CDS-001 MSNLKLPTAPNAGLFKQGYQTSNAEDGAVQRNIQACREITGMVRTSIGPCGRNKIVVNHL
GRIFLTSDAATILRELEVIHPAAKLLVQASQQQELECGDATNLVLTLAGSLLNKADELIR
IGLHPSEVVQGYERAKGLALMELETIAAETTANAELANGDTAQALVTSQLLARAVKTAVA
SKQYGHEAIISRLVTEAVQHVMPKNIKAFNVDAIRVVKIMGASLGASQVIKGMVFNREPE
STVKNCGKAKVVVFSTPVDISSTETKGTVLLKSAQEMLNFSKGEEAQVETMVKNIADSGV
KVVVCGAGLGDLPLHYMNRMGLIALKVPSKFDLRRLCRVVGATPLARVGAPLPEEMGTVD
VVETIEIGGDRVTVLRQEDEATRTATVVVRGATQNALDDVERAIDDGVSVVKSISKDPRL
VPGAGATEIRLVSTIVQQGERTQGLMQHAIKAYGQAFEVLPETLAENAGLDAIEVLARLY
AAHSEGRNTTGVDVDDNDSTGTCDASAADIFDSYSAKMSAIELATDVANTILTVDQIIMA
KRAGGPTMPKQQSIGNWDQDD*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG