YALI0D11132g

Overview

Description similar to uniprot|P36037 Saccharomyces cerevisiae YKL213c DOA1 involved in ubiquitin-dependent proteolysis
Locus type CDS
Locus tag YALI0D11132g

Location

Species Yarrowia lipolytica Positions 1397888..1400108
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2221 (nuc.)
Previous locus YALI0D11125g Next locus YALI0D11154r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D11132g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D11132gYALI0D11132g_mRNA-001YALI0D11132g_CDS-001

Nucleotide sequence

 

>YALI0D11132g
ATGGCACCGACTTACAAGATTTCGAAGACGTTGATTGGACACGAGCAGGACGTCAAGGGC
GTCTGTTTCGTTGACTCAGAAGTCGTCTCCTGTTCTCGAGACACTAGCGTGCGAAAGTGG
CACTCTGACAGATCGTCAGATGCGATATACAACGGTGGCGGGTTCATGAATGCGATTGCT
GCGGCCCCCAACGGCCGTCTCATTGCTGCAGGAGGCCAGGACAAGATGATTGCGCTCATT
GGCGACGACACAGCTCGATTTCTGGTTGGTCACGAGGGAAATGTCTGCGCTCTAGACCTT
GCTGACGATCTGGTCATTTCCGGCTCCTGGGACAAGACCGCCAAGGTCTGGAACGACGGC
CATGTGCTGTACAACCTCGAGGGCCACGCTCAGGCTGTTTGGGCCGTCAAAATCGTCTCT
GCCAAGGAAAATGTGTTCATGACGGCCTCTGCTGACAAGACCATCAAGCTGTGGCACCAC
GCCCAGTGTGTCGCCACCCTGCCTGCTCACACCGACGCTGTTCGAGGCCTTGCTATTTTG
GGCGACGGCAAGTTTGTGTCTGTCAGTAACGACACCACAGTCAAATTATGGCAACTGTCA
TCTGATAACAAGTCAGCAAAGGAGATCAAGACGCTCGACGGTCACACATCGTTTGTCTAC
TCCGTCGCAGCAATTAGCCCCACAGAGTTCATCACTACAGGCGAGGATCGAACCGCTCGA
ATCTGGAACGCCACTACAGGAGAGACTACCCAGGTCATCACTCTTCCTTGTGTTTCTGTG
TGGTCTGGCGCCACAGCCTCCAATGGCGACATTGCCGTCGGAGGCTCCGATGCCAAGGTG
CGCGTCTTCTCACGTGACTCGTCACGATTCGCAGATGTTGTTGAAATCGAGGACTTTGAA
GCCTCTGTGGCAAACTCGGCTATCGGCAAGGACCAGGTCGGAGAGATAAACAAGGACAAG
CTGCCTGGACCCGAGCGTCTGTCTCAGCCTGGCACAAAGGAGGGAGAGGTTATTATGGTC
AAGGGCAACGGAATTGTGGAAGCTCATCAGTGGTCTGCTGCTTCTTCCAGCTGGACCAAG
ATTGGAGAAGTAGTTGATGCACCCGGCGCAGAGCGAAAGAAGGTGGCTGAGGACGGAAAG
GAGTACGACTACATTTTTGACGTTGACGTAGAGGAGGGACAGCCAGCACTCAAGCTCCCC
TACAACTCCAATGAGAATGTCTATGCAGCTGCCCAGCGGTTCATTGACCGGTACGAGCTT
CCCCAAGGTTACTTGGAGGAGATTGTGCAATTCATCATCAAGAACACCGGTGGCGTCAAC
ATTGGAGGCGATTCTGGCCCTGCGCCTGATCCCTACGGGGGTCGATACGTTCCTGGTGGA
GAAGTGAGCGGCCCTACGCCTTCTGTTTCTGCTTCTGCAGCAGCAGCTGCCCCCTCTATC
GAACCCGCTCCTTTCCCACTAACAACTCCTCTTTTCATCAACACATACAACGCTGCGGCT
CTCAGCAAGGGTCTGGACAAGTTTAACTCGTCCGAAGCCGCCCCTTTGGCTGATGACGAG
CTTTCTGCACTCAAACTTGCGCTTTCCAAGAACGAACTGGGCTCCTCCCTGCTTTCAGTG
GTGCTCAAGATTGTTTCTAGCTGGTCTGAGCCTCTTTTGGGACTGGATATTCTGCGCCTC
ATGGCTGAGAAGCTGGGCGCTCCAAAGCCTGAGATTGTCACAGCCGTTGAGGGCGCTGTT
GCATCACCCAAGCTGGCCCACAAACTCATGGGGGTTCGGTTTGTGGTCAACAGCGTGGCT
GCCAAAAATACATTCCCCGACGTTGAGTCGGTCATTGATACCGTTAAAGGGACTCTGGCT
GACTACAAGTCGGAAAAGCTGTTTGGCCAATATGAGACTGCTGTTGCCACACTGCTGCTG
GATCTCGCTGTGAACGCATACGACGGTGGCAACGTGGAGGCTGCCTTTGGTCTTCTGCAG
AGCATCAGTGAGGTGTGGGAGAAGGTGACTGGCAACGAGGCCGTCTTCCGACTGGCCGTG
GCTGCGGGCACGCTGTTTTCTCTCAAGAGCGAGGAGGTTGCCAGCTGTTATGATCTGTTC
AACTATGCTTCTCTGGTGGCTCGTCCCTATGATGAGCTTCGGCTCAAGAAGGTCATGGTT
AATCTCACCAAGTAATATAGCTGACATAGAAAGATGAATGAATATACGACTGAATGAAGC
G

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D11132g_CDS-001

Protein length: 725 aa.
Product: WD repeat protein required for ubiquitin- mediated protein degradation, putative

>YALI0D11132g_CDS-001 MAPTYKISKTLIGHEQDVKGVCFVDSEVVSCSRDTSVRKWHSDRSSDAIYNGGGFMNAIA
AAPNGRLIAAGGQDKMIALIGDDTARFLVGHEGNVCALDLADDLVISGSWDKTAKVWNDG
HVLYNLEGHAQAVWAVKIVSAKENVFMTASADKTIKLWHHAQCVATLPAHTDAVRGLAIL
GDGKFVSVSNDTTVKLWQLSSDNKSAKEIKTLDGHTSFVYSVAAISPTEFITTGEDRTAR
IWNATTGETTQVITLPCVSVWSGATASNGDIAVGGSDAKVRVFSRDSSRFADVVEIEDFE
ASVANSAIGKDQVGEINKDKLPGPERLSQPGTKEGEVIMVKGNGIVEAHQWSAASSSWTK
IGEVVDAPGAERKKVAEDGKEYDYIFDVDVEEGQPALKLPYNSNENVYAAAQRFIDRYEL
PQGYLEEIVQFIIKNTGGVNIGGDSGPAPDPYGGRYVPGGEVSGPTPSVSASAAAAAPSI
EPAPFPLTTPLFINTYNAAALSKGLDKFNSSEAAPLADDELSALKLALSKNELGSSLLSV
VLKIVSSWSEPLLGLDILRLMAEKLGAPKPEIVTAVEGAVASPKLAHKLMGVRFVVNSVA
AKNTFPDVESVIDTVKGTLADYKSEKLFGQYETAVATLLLDLAVNAYDGGNVEAAFGLLQ
SISEVWEKVTGNEAVFRLAVAAGTLFSLKSEEVASCYDLFNYASLVARPYDELRLKKVMV
NLTK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG