YALI0D10505g

Overview

Description similar to uniprot|Q07896 Saccharomyces cerevisiae YLR002C NOC3 Protein that forms a nuclear complex with Noc2p that binds to 66S ribosomal precursors to mediate their intranuclear transport
Locus type CDS
Locus tag YALI0D10505g

Location

Species Yarrowia lipolytica Positions 1312306..1314398
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2093 (nuc.)
Previous locus YALI0D10483g Next locus YALI0D10527g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D10505g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D10505gYALI0D10505g_mRNA-001YALI0D10505g_CDS-001

Nucleotide sequence

 

>YALI0D10505g
ATGGTGAAACGATCGCGAGACGTGGCCAAGTTTGAAAAGCGGGCCAAGGCTCGGCAGGAG
CAGGACAGCAAGCTTGCGCAATCATGGCAGTACATCAAAGACTCTGACAACGAGGAGGAT
GAGGACTATGGACCTCGATCTTTCAAGGAGGAAGAATCTCTCGGTGAAATGCTGCCTGTG
CGAGGCGAAGACGGCCAGATCAAGCGGGTGATGCGCAAGAAGGGCGACAAAATCAGCAAG
CGAAAGCTGGAGGAGCAAGCTGAGAGACAGCGACAGGAGGAAGAGGAGGAGGCAGCTCGA
GAGGCAGCAGAGGCAGCAGCAGCAGAACAGGCAGCCAAGGAGGCCGCCGAGAAGGAAGAG
GAGGACGACATTGGCGATTCTGATTTCGAGGAGGAAGACGAGGTCACTGGAGAGGCCCGA
TTTCGAAAGGCCCAGGCCGAGATTGCAGAACTGGCCGACCAGCTCAACGAGGACGCCGAG
GAGAACATTCACTGTCTGCGCAAGATTCGGGAGCTCATGGGTCGAAAGCAGTCATTCCGG
GTGGTACAACTGACGATTCTGTCGCTGGTTCCTATTTTCCAGTCGATCATTCCTGGTTAC
AAAATCAGACCCTTAACCGAGGCCGAAAAGCGAGAAAAGGTGTCTAAGGAGGTCAAGAGA
CTACGAAACTTCGAGACGTCGCTGCTGCAGAACTACAAGGCGTATCTAGACTACATTAGC
AAGTTTTCCAAGAAGGCCCGAGGCTCCACTGAAGGCACCATGAAACGAATTTTGGGAGAC
TCGTGCGTGGTGGCAGCCTGCGAACTTCTCAAGACGTCTGCGTACTTCAACTTCAGATCT
GACCTCGTGGCGATTGTGGTGAACCGTGTGGGACAGAAGCCCTACGACGCCAACTACTTC
AAGGCGTTGTCCACCATCGAGTCTCTGTTTGAGGACGACTTCGAGGGTTCTGCTGTGAAG
GAGATTGTCATGTCCTTGTCCAAGATGATCCGTGCAAAGAAGTATAGAATTGACGAGTCG
TTGCTCAACTCACTGCTTAAACTGCGGTTGCTGACAGAGCTCGACGCCAGAGCTTCCCAG
AGACACGTGGAGTCTCAACAAGCACCGACAGCCAAGGTGCGAAAGAAGGACCGAGTGCAC
CTGACCAAGAAGCAGCGAAAAACGCTCAAGGAGAAGAAGGAGATCGACGAGGAGATGCTA
AAGGCAGAGATGGCGGTATCGACCGAGGAGCGAGAGAAGATCCAGGGAGAGACGCTCAAA
ATCGTCTTTGTTCTGTACTTTAACATTCTCAAGGAACGACCACAGCATCTCATGGCAGCC
ACTCTGGAGGGTCTGGCCAAATTTTCGCATCTCATCAACGCCGACTTCTTTGGCGATCTG
CTGGAGGTGCTACGGGAGCTCATCACCGAGCGTCAAATCCGATACACCGACGACGGAAAG
CAAGAGTTCTTGGAAACCTCTACCCGAGAGGCTCTTCTGTGTATTGTCACTGCATTCGTG
CTGCTTGGAGGCCAGGTGGGCGAGTCCATGAACCTCGATCTGACCTTCTTCATCAACCAC
TTCTACTCGTCACTCTACGCTCTGGGTCTCAACCCCGACATTGAGCTGTCACACAAGTCT
CTTCGTCTTGATGATCCCAACACCAACGAGTCCGCCAGCAATAAGCGGTCCAAAATCAAC
GTGGCCACAGAGATGGAGATGGTGGTGAGGTCGTTCGAGGGTATTTTCTTGCAGCAGAAG
CACGTGTCTCGGCTGCGAGTCCAGGCTTTTGCGAAGAGACTGGCTACCATCTGTCTCCAG
CTACCCGAAAAGTCGTGCATGGCCGGTCTCAAGATTCTCGACCGGCTCAATAAGAAGTTC
ACCGTTATGACCGCTCTGTACTCGTCCGACGACCGAATCACCAACGGAGTGTACCGAATG
GACGTGGACCAACCCGACCATGCCAACCCCGAAGCATCTACCATCTGGGAGACAGTGTTG
CTGGAGAAACACTTCTCGCCAGACATTGCCAAGGCCGCCAAACTGGTGCCCCGAAACGTC
AAGAAGAACAAGCATTAGAGAGGATTATAGAAATGTATATTTGGACAACAGGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D10505g_CDS-001

Protein length: 686 aa.
Product: Subunit of a nuclear complex with Noc2p and pre- replicative complexes, putative

>YALI0D10505g_CDS-001 MVKRSRDVAKFEKRAKARQEQDSKLAQSWQYIKDSDNEEDEDYGPRSFKEEESLGEMLPV
RGEDGQIKRVMRKKGDKISKRKLEEQAERQRQEEEEEAAREAAEAAAAEQAAKEAAEKEE
EDDIGDSDFEEEDEVTGEARFRKAQAEIAELADQLNEDAEENIHCLRKIRELMGRKQSFR
VVQLTILSLVPIFQSIIPGYKIRPLTEAEKREKVSKEVKRLRNFETSLLQNYKAYLDYIS
KFSKKARGSTEGTMKRILGDSCVVAACELLKTSAYFNFRSDLVAIVVNRVGQKPYDANYF
KALSTIESLFEDDFEGSAVKEIVMSLSKMIRAKKYRIDESLLNSLLKLRLLTELDARASQ
RHVESQQAPTAKVRKKDRVHLTKKQRKTLKEKKEIDEEMLKAEMAVSTEEREKIQGETLK
IVFVLYFNILKERPQHLMAATLEGLAKFSHLINADFFGDLLEVLRELITERQIRYTDDGK
QEFLETSTREALLCIVTAFVLLGGQVGESMNLDLTFFINHFYSSLYALGLNPDIELSHKS
LRLDDPNTNESASNKRSKINVATEMEMVVRSFEGIFLQQKHVSRLRVQAFAKRLATICLQ
LPEKSCMAGLKILDRLNKKFTVMTALYSSDDRITNGVYRMDVDQPDHANPEASTIWETVL
LEKHFSPDIAKAAKLVPRNVKKNKH*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG