YALI0D07194g

Overview

Description weakly similar to uniprot|P19263 Saccharomyces cerevisiae YLR071c RGR1 DNA-directed RNA polymerase II holoenzyme subunit
Locus type CDS
Locus tag YALI0D07194g

Location

Species Yarrowia lipolytica Positions 916623..919488
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2866 (nuc.)
Previous locus YALI0D07150g Next locus YALI0D07216g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D07194g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D07194gYALI0D07194g_mRNA-001YALI0D07194g_CDS-001

Nucleotide sequence

 

>YALI0D07194g
ATGAAAGGCTCGGATATCCCGCACGTGGAGGCCAACTACGTCGACCTGGGTCGAGCCGTA
GGCACCGTGTGTGACAACGCGCACCGCGAGCTGGCCAACGTGCTGGAAACGCTGCCCTCG
ACGCCGGCAGACGTGGCCAAAAAGCAGGCGCTGCTGGAAGTGCTGGTGCGAGCTCGTCAG
GAGTTTGTGCGCACCTATGTGCTGACCAAGTGGGCCAAGGTATCGGAGGACGTGACAAAG
TGCATCGACGTGGTGGCGTGGTTGCATGGCCAGCGCAACTGCTTCGACAACTTGAACCAC
ATGCTGGTTGGCTTGGGCCGTGACCTAGGAGCAGCCAAGAGCCGCAATCCAGACCTCCAG
ACAGCCGTCCAGGTGCTGACCCGAGGCGCACCCACAACGTTCGGCGACCACGACATGGCG
CCCAAGAAAAAACTCAAGCCACAGACGATACTCAGAACATTGAGGGATCTCAACGTTTTG
TTGTCTGTGCAACTGGCGCAAAGCACAGACATTCCGCCGCAATTCAAGCGGTACAAGATT
GCCAACGGACGAGCCACATTCACTGTGGCAAACGCTTTCGAGGTGGATGTGGGAATTGCA
GATGATACATTGGATGGACCGTTTTTCTTCATTGACTTCCGGCTGCTGTTTGGGGACAGA
AAAGAACTGCCTCCCCAAACGCGAGGCATGCTGGAGCGTGCAGGAAACTCGGCCCTGGCC
CAGAGAGGCCTCTCGGCGCTGTATTCTCTCCTGATGAAGTTTGCGCTTAACTACAAACTG
GCCCTGATCTACAAACAGATCATGGAGATGAGCAAGGGTCTTTGGAGCGGCACTCTGAGA
CATAGATTCTACCAGGAAAGGAGCTTGATTGCACTGGAATACTGGGTGAGCCAGCATGCC
ACCCACAGACCCAAGAGTACGCTTGAAATCGGAATCTTTTCAGAATCCGATTTGCGAATA
GCTGTGCGATGGAGCAGACAAGGGGAGGAGGTGCCGTACTCGGAGCACCAGATTCAGTTT
GGAGGTGAATCGACCGACGTGGCTTCTCTGCTGGAGTACGTCACTACTCTGCATCTCAAA
CACATCATTTCTTGTGTCTACACCAAGCTCAGAGCATTGTTGGGCGACTCGAGCGATATG
GTGTCGTTGTGCAGTGACGGACATAAGTTGAGATTCAGACTAACGTCTCTGAGATCAACT
GTTTTCACAGTGGACCGTTTAACGGGTAAGACTGTTCTTGAGAATGCCACTTCTCTGATT
CTTTCAGCGGAGAGATCGCTCAATGAACTTGTGTCCCGCCCAGATCAAGCTGCTTCTGTA
CTGTTCAAGCTGCGTCTCCTGTCTCTTGAAAACGACATCAGAACACGGGCTTGTGCCACC
GGCTGGACTGCTCAGAACGTGACACTGTCGACTGACGAGATGAAGACGCATTTCGGCTTC
ACCACCCGATACGTGCTGTTTCTGCGACAACCACAGTGGCCCTCAAATTGGTTTGTCGTC
GTCACTGTGCCTGAAGATGGCTCTTTGCCGCTCTGGTGGATAGCCAAACTGCGAGTGCGC
AAAGACACAGCCTGGACAGCAGAATGCATGGATCGAATCCACGTGAACCAGGATCTTGAT
AGTCTGTACGACTACGAGCTGCTGACTCAGATGGTGACTTTCGCGTCCCATCGAATCGTG
CTTCATCCTATTTTGGACGAGCTGCGCGCTGCTAAAACCCCCTTCCGGTTGCTTCGGTCT
GCCCAGCATACACCTGTTGTTGCCATTGACAACTCAGCCTTGGTCACGTCGTGGTCGCAT
TCGTCTCTGTTGATTTTACCTGAAATGAGTGCAGGAAGCATGGATATGAAGCTACATGTT
CAGGGACGGGCCAAGACGGTCATGAACTTGCCCTCTAACGATTCCATCGACTTTGACGCG
TCCACTGGCATCTATAAACTGACTCTGGAGGGTGCCAATACACCTGGTTTCTCTCTTGTC
AACAAGTTGAAGGAGCGACTTCAGCAGATTGAGCAGATTGTGAGCTACATTGAACTCATC
AAGGATCTGGGTCTGGAACTGGTGACGGCTTCCATGCAGCAGATCAAGTTCAAGTTGGGA
GATGCACAGGTGAGTGTGGATATCCCCAGTGAGCTCAACCCGAATATCACTCTGCACTTG
TCCCCCACGGACCCCCACAATATTATCCACTCGTACTTGCAGGAGACTCTCAACAGCAGT
GGTTTGAGACCTGTCGTTTGGTTGCTTCAGACCACGAGAAATCTGTATACTACTCTTCAG
AAGCTGCAAAAGACGAGGGGAGGGGATCCTGAACAACTTGAGAAAATCATCTCGAATCTG
TCTATTTCCGATCTGGAAACGCGCCAGAAACAACTACAGCCGCGTCTCAGCATTGTTCCG
CGTTCGGCGGCCTTTGTGCGGCTCGTTTACCCCGGAAAGATGAACATTGACGTGACTCTG
GTTCGTCATAGTGCTACGTTAGACGGAGTCAAGTTTTTCATCAAAGAGAGCCCTCTGGAG
CTGCCTCCTCCCCCTCAGCCAGGGCAACCGCCTGTTGCAGTGCCCAGGAAGTTGCAAGTC
TGGAACGGCTCTGTGACCCCAGATGTGGATGTGGGCAAGGCGGTTTACTTGAATGACGGT
ATTGCTTGTGAAGGAGACAACGTAGGCAAGGTGTTGGAGTGGGTGGATAAGCAGATAGGC
AAGTGATTGGCAGGAGAGATATGACGACAGAAGAGGACCTGGGATAATTAAGACGAAGGA
GACGGCAAGCCTGTCTCGGTTCGGATGTACAACAAGGGGACGTTCATTCCAGATGAAGAA
AAGAAAACACATAATAGCATATAGTAATGATGGAGTGAAGTGAGAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D07194g_CDS-001

Protein length: 902 aa.
Product: Conserved hypothetical protein

>YALI0D07194g_CDS-001 MKGSDIPHVEANYVDLGRAVGTVCDNAHRELANVLETLPSTPADVAKKQALLEVLVRARQ
EFVRTYVLTKWAKVSEDVTKCIDVVAWLHGQRNCFDNLNHMLVGLGRDLGAAKSRNPDLQ
TAVQVLTRGAPTTFGDHDMAPKKKLKPQTILRTLRDLNVLLSVQLAQSTDIPPQFKRYKI
ANGRATFTVANAFEVDVGIADDTLDGPFFFIDFRLLFGDRKELPPQTRGMLERAGNSALA
QRGLSALYSLLMKFALNYKLALIYKQIMEMSKGLWSGTLRHRFYQERSLIALEYWVSQHA
THRPKSTLEIGIFSESDLRIAVRWSRQGEEVPYSEHQIQFGGESTDVASLLEYVTTLHLK
HIISCVYTKLRALLGDSSDMVSLCSDGHKLRFRLTSLRSTVFTVDRLTGKTVLENATSLI
LSAERSLNELVSRPDQAASVLFKLRLLSLENDIRTRACATGWTAQNVTLSTDEMKTHFGF
TTRYVLFLRQPQWPSNWFVVVTVPEDGSLPLWWIAKLRVRKDTAWTAECMDRIHVNQDLD
SLYDYELLTQMVTFASHRIVLHPILDELRAAKTPFRLLRSAQHTPVVAIDNSALVTSWSH
SSLLILPEMSAGSMDMKLHVQGRAKTVMNLPSNDSIDFDASTGIYKLTLEGANTPGFSLV
NKLKERLQQIEQIVSYIELIKDLGLELVTASMQQIKFKLGDAQVSVDIPSELNPNITLHL
SPTDPHNIIHSYLQETLNSSGLRPVVWLLQTTRNLYTTLQKLQKTRGGDPEQLEKIISNL
SISDLETRQKQLQPRLSIVPRSAAFVRLVYPGKMNIDVTLVRHSATLDGVKFFIKESPLE
LPPPPQPGQPPVAVPRKLQVWNGSVTPDVDVGKAVYLNDGIACEGDNVGKVLEWVDKQIG
K*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG