YALI0D06820g

Overview

Description some similarities with uniprot|P32337 Saccharomyces cerevisiae YMR308c PSE1 beta karyopherin
Locus type CDS
Locus tag YALI0D06820g

Location

Species Yarrowia lipolytica Positions 874686..877488
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2803 (nuc.)
Previous locus YALI0D06798g Next locus YALI0D06842g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D06820g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D06820gYALI0D06820g_mRNA-001YALI0D06820g_CDS-001

Nucleotide sequence

 

>YALI0D06820g
ATGGACCAACTCCTCATCCTCTCCAACGCCCAAGTGGAGGAGTTCCTGCACCCGTTCCGG
GCAGGCCTGAGAGATGTCCACTCGGACACCAAGCTGGCGACGCTAGGCGCTATCACCACG
CTTCTGACTTCGATAGAAAAGGACGCCTGGGCGCCCCTGGAGCCGCTTCTGGAAGACATT
CTCGAGCTCTACGACCCGAGCTCTTCCCCCAACAAGCCCACCCAGATGAAGACCTACAAG
AAGCTCATTGCCCTCGCCCAGGTGGCACCCCGGTTTTTTGCCCCCAAGTTCCTCGAATTC
GCTACTCTAAGCACAGAAATTGTGTCTACAAAACGCCATCCTGTCGAGTTCCGGCTGCTC
CCTCTCGAATTCATGACCATGTTTGTCACCGGTGTCCCCCACCTCTGCCGTGCCAGCCCC
GGCTTCATCAAGAACGTCATCTCCTGCTGCGTTCAGATGATCGCCGAGGGAGAAGACACA
AAGAGCAAAGACAGAGAGTTCAACAACTCTGCTGAGAAAGAGGCGTGTCAGTTTCTGACC
ATGCTGGCCCGAGAACTCCAGGAAACCGTGGTGATGGCTTTGTTCAACTACCTCAAAATC
CAGGAGACCTCTCTCGCGTCCACATGGCAGAACCGGTACGCCACCCTCATGGCCATTGCC
TCCATTTCTGAGGGCTGTCCTTCGACAATTCTCAAAGAGGAATATGAGGTGCTCAGGGCC
ATCGAGAAGGCCTTGTGCGATTCAAGCACCAGGGTACAGTGGGCAGGATGTCATGCTCTC
GGGAGAATTAGCGTCGATCTCGCAGGAAAGGTCCAGGTGAGATATCATGAGCGAGTAGTC
GCTGCTGTAACCCGTACGTTGAGAACCCCCCGAGCAGATAAGGCTGTGCTGGCCTCGTGT
GCCACAGCTCTTGCCCACTTTTGCCACAATGCTTCCAAACAAATTCTAACTCTCTATGTA
GACGACGTTGTCAACACCCTGCTGCATCTCGTCGACGAAAAGGATAACCCTCTCTACCTC
AAGCAAGAGGTAGTGTTTGCCGTCGACCGCATCGCGTCTATTGCACCCGACAACTTCGTG
AAATGCTACGACAGATTTACCCCATTGCTAGTTTCACTATTGAATTCTACCGATTACACC
GCCGACGAGAAAATCCCCTTCCTCGAGTGCACCGGCACTATTGGAGCTGCTGTGGGCCGT
GACCGGTTCTCTCCTCACGCCGAAGAGCTCGCCATTACGTACAGTGCACTTCGAGAGACT
GGATCTTCTCTCAAATTCTTCTCTGCTCTCGCCATGGCGTGGACCAAGATCAATCCGCTT
ATGGGACACTCTCAGTACCTCGATGAGATTGAACGTGTTGTCCGTCCTCTCATTGAGTCT
GCACAGGTGGTTCCTAAGATGGTGATGATATATAACGACGACGATGTCCGACGGTTTACC
AAGGCCAGCGACTGGCAGGTATACATGCTTGGAGGCAAGGCTCTGTGCACCAGCAAGCGA
GAGCTAGAAGACAAGGCTCTCGCCATCGGAACCCTCACTTCCATGACTATGCTTCTGAAG
GATCGAATGTTCCTAAAGGACAAGCTCGTCGAAATCACCGAGCTGTGGGTCAAGCGCTTT
GAGTTTGAGAACGTTCAGTCTATGGCTGCCAAGCTGTTCCCTCATCTTCTCGAGGCCATC
TTGCTTGATGGTCAGACCACCGGTGCCATGTATCGTCTTGACAGAGCCTGGGGTCTGATT
TTCAACTGCGCCATGTCCGTCATGAGCGAGAACATGACTGTTGGCACCCTTGCCACCTTC
TACCGGGAAATCCATAGCACTGTTCGAAAGCTCGGTCGCACTTCGCTTGTCGATCGACAG
ATGAAGGAGCTTGTTACCGTCCTAGTTCTCAACATGTCTCAGCTTGCTGATCGACACACC
CAGCACTATCTCGAGCTTGGTTCTGCTGCTCCCTTCATGAGTGCCGACGACCGAGAGCTG
ATTTCCGAGCAGAAGAAGATTGTTCTGTACGCCCATGCCATCAAGGGCAGTCCCTTCATC
TCGCTGCTTGAGGAGAAGCTTATGTCCATGCTCAATGATGTTTCTGCCCCTCGTACCGTC
ACCCAGGGTATTCGAATTCTGTCTTTCCTGCTGGAGATTTATGGCCGTGAAGTCGCGCTT
TACTCTCTCATCACCAAGGTGACCTCGTCCATGTACTCTCTTGACCTCGGTGTTCGAGCA
GAGGCGATCCGATGCATTGGTATTGCCGCCGAGTTTGGCGGCGAGGCCTATTCCCAGTAC
ACTGTGCACCGATTGAACGACCTGTTCAACTTTGCTGCTTCACGTGACCACGAGGCCATG
TACTGCATCGAGAATGCTTGTGCCACCATTGCCAAGATTGCCAAGAGCGGCGTGCTCACC
AAGGGCTCGGATCTGTCCAACATGGCTGTCGATGCATTCCTCAAGTCGCTTCCTATCACA
CGAATCCGCGAGATTGCGCCCACTGCGTACGTCTTTTTGATGGATCTGATGGACAGCAAC
CACCCTGCTGTGAAGGAAGGCGCCGAGAAGATGATTGGGTCAATCGAGGCTGCGTTCGCA
GAAAATGTGCTGGAGGAGGAACAGGCGCGAGAGCTGATTCTCGCCATCCCTGGCTGGCTT
TACCGAGACTTCCAGAACGAGCCCAAGCGGATGCGACATCTTGAGTCCATTCTGTCGGAC
GGCATACAGGCTGTTATTCGGAATGTCCGAAACGCCATTTAGACATTGTGAGAGCGAGGC
AAAGAAAGGCTGTGTAATATAGATAATACGTGGTGGTTGTTCA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D06820g_CDS-001

Protein length: 914 aa.
Product: Conserved hypothetical protein

>YALI0D06820g_CDS-001 MDQLLILSNAQVEEFLHPFRAGLRDVHSDTKLATLGAITTLLTSIEKDAWAPLEPLLEDI
LELYDPSSSPNKPTQMKTYKKLIALAQVAPRFFAPKFLEFATLSTEIVSTKRHPVEFRLL
PLEFMTMFVTGVPHLCRASPGFIKNVISCCVQMIAEGEDTKSKDREFNNSAEKEACQFLT
MLARELQETVVMALFNYLKIQETSLASTWQNRYATLMAIASISEGCPSTILKEEYEVLRA
IEKALCDSSTRVQWAGCHALGRISVDLAGKVQVRYHERVVAAVTRTLRTPRADKAVLASC
ATALAHFCHNASKQILTLYVDDVVNTLLHLVDEKDNPLYLKQEVVFAVDRIASIAPDNFV
KCYDRFTPLLVSLLNSTDYTADEKIPFLECTGTIGAAVGRDRFSPHAEELAITYSALRET
GSSLKFFSALAMAWTKINPLMGHSQYLDEIERVVRPLIESAQVVPKMVMIYNDDDVRRFT
KASDWQVYMLGGKALCTSKRELEDKALAIGTLTSMTMLLKDRMFLKDKLVEITELWVKRF
EFENVQSMAAKLFPHLLEAILLDGQTTGAMYRLDRAWGLIFNCAMSVMSENMTVGTLATF
YREIHSTVRKLGRTSLVDRQMKELVTVLVLNMSQLADRHTQHYLELGSAAPFMSADDREL
ISEQKKIVLYAHAIKGSPFISLLEEKLMSMLNDVSAPRTVTQGIRILSFLLEIYGREVAL
YSLITKVTSSMYSLDLGVRAEAIRCIGIAAEFGGEAYSQYTVHRLNDLFNFAASRDHEAM
YCIENACATIAKIAKSGVLTKGSDLSNMAVDAFLKSLPITRIREIAPTAYVFLMDLMDSN
HPAVKEGAEKMIGSIEAAFAENVLEEEQARELILAIPGWLYRDFQNEPKRMRHLESILSD
GIQAVIRNVRNAI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG