YALI0D06776g

Overview

Description similar to uniprot|P46948 Saccharomyces cerevisiae YGR195w SKI6 3 -5 exoribonuclease required for 3 end formation of 5.8S
Locus type CDS
Locus tag YALI0D06776g

Location

Species Yarrowia lipolytica Positions 870124..871539
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1416 (nuc.)
Previous locus YALI0D06754g Next locus YALI0D06798g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D06776g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D06776gYALI0D06776g_mRNA-001YALI0D06776g_CDS-001

Nucleotide sequence

 

>YALI0D06776g
AACAGCACATAATGGTGAGTTCGAGGAGGATGTGAGGAGGGAAGGGGGGAGGGAATATGA
GGAAAGGCGCAGCCGCCCTAACGCCTCCGACCATCTATGCGTCGTGAAAGAAATCAGATC
GATCCTCCCAGGCATTTGCGGACGTTTTTCAAACGACTGTAATCTGACGACTTTGACATC
TGACAATTGCTGGTTTTCAGCATCTCAATGTTCGTTTGGGAACTCTCTGACACGTCTGCA
AATTGTGATTCATTTTGGATCAGACGCGGGCGCTTAGGATCAGACACAGGCACTTTGGAT
CAGACACACAGGGCACTTTTGCCTTCATATTCTTCACCACTAACCCAGTCTCGCCACGAA
ATATACTCCCCCGAAGGTCTGCGAACCGACGGACGACGGTGGAACGAGATCCGGAACTTT
GACTGCAAAATCAACACCCACCCGACCTCGGCCGACGGCTCGTCGTACGTCGAGTGGGGC
CACACCAAGGTGGTTTGCACCGTGGACGGACCTCGAGAGCCCGACAACCGCCAGAACACC
ACTGACCGGGCGGTCATCAGTGTCAATGTCAATGTGGCCTCGTTCAGCACAGAGACGCGG
ATCAAGCGGCAACGCAACGACAAGCGGCTCGCGGAAATGAACATTCTCATTCGCCAGCTG
CTGGAGGAGGCGGTGCTGACCAAACTCAACCCCCGAACCCAGATTGCCGTCAATATCACC
GTCATTGCCCAGGATGGCGGGCTTCTTCCTGCCTGCATCAACGCCGCCTGCCTGGCCATG
ATCGATGCCGGCGTGCCTCTCACCGACTATGTGTCTGCCTGTTCTTCCGGCGTCTACTCT
AACAACGCTCTGATTGATCTCAACACCCTGGAGGAGCAAGACGTGCCGTTTCTGACGATT
GGCGTCATTGGCAAATCTGACAAGATCTCAATGCTGACGCTCGAGACACAGCTGCCCATG
GCGTCGCTGGAACCCGTGCTCGCCACCTCGCTGAGCGGGGCACACGCCATCCAGGACATT
ATGGACGCCGCCGTTAGAAAGCATGGTAAGCATAGACTCGAGAGAAAGTAACATAGCATC
AGGGGCGAGGTGTAGAGAGAGGGAGATGAACGACGGAGGGATATCGGATGGTCTTCGATT
GGGGCAAATGTCACTGTGGGAATTCGCAAACGGCACGTAAAAGGACTCGCAAAAGGACTC
GCAAAAGGACTCGCAAAAAAACTCGCAAAAGGACTCGCAAAAGGGATTTGTCATGGGAAC
TCGACATGGGAACTCGACATTGAGAACCTCACCAAGGAGAACCTGCCCGTCATGACACTC
ATCTCTCTAATACGAGTAGACGCGAGCCTCTGAAGAGAATAGCCAATGATAGAACCTCTG
TATACATAGATAAGATATTTTTATTACACATTTCAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D06776g_CDS-001

Protein length: 242 aa.
Product: Exosome non-catalytic core component, putative

>YALI0D06776g_CDS-001 MSRHEIYSPEGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPD
NRQNTTDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQI
AVNITVIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNALIDLNTLEEQDV
PFLTIGVIGKSDKISMLTLETQLPMASLEPVLATSLSGAHAIQDIMDAAVRKHGKHRLER
K*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG