YALI0D04444g

Overview

Description similar to uniprot|P52918 Saccharomyces cerevisiae YDR335w MSN5 multicopy supressor of SNF1 mutation
Locus type CDS
Locus tag YALI0D04444g

Location

Species Yarrowia lipolytica Positions 549790..553899
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 4110 (nuc.)
Previous locus YALI0D04422g Next locus YALI0D04466g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D04444g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D04444gYALI0D04444g_mRNA-001YALI0D04444g_CDS-001

Nucleotide sequence

 

>YALI0D04444g
ATGGAAGAGCAGGCCATTCAGCAGATTGTGTCCTCGCTGGAGCTGGTGCACGATCCGCGT
ACCAGCAACAGACAGCGGCAGGAGGCTCAATCGGTGAGTTATTTGAACCAGAACGATATT
GACAGGATGAGGGATGAAGAAGGGGAATCATGACCACTATGGATACCCACAAATACGCTG
TGACACAGATACACCTGTGACACAGACACGTGTGGTTAGAATTTGTAAAGGGCGCTTGAG
AAGGAGTATTTCCCCCCACCACAACCATCTTGCCTCGCCCCACACCATGCGATCACTAAC
ACCAGCTCTTGGAAACCATCAAACAAAATGAAGACGCGCCGTTCTGGGGTTGGCAGCTGG
CGTCGCCCAAACAAGGCTACTCGCCCGTGGTGCGCCACTTTGGCCTAGGGCTGATCCAGC
ATGCCATCCAGTACATGTTTCTGTACTACGACGCCCCCCGCAAGGCCGCGGTGCGCGACT
GGGTCATTGATCTAGCGACCAATGTGACCGCCGACGACCCCCATTACATCAAGGAGAAGC
TCTGCGTGCTTTGGGTCAACATCGCCAAGCGAGTGTGGGGAGTCGACAAGCCCACCGATA
CAGACACAAACAACAACACAGATTCGAACAACACAGACAACAACAACAATAACAATAGTA
ACAGCAGCACAACAACCGACTCGTCGTGGAAAAACATGGACGCGCTGCTCGTCCAAATGT
GGGATGCCAACCTCCAGACCCGGGAGATCTCGCTCGGTGTGTTCCGAACGCTGTTTGAGG
ACATTTGGATCCTGGAAGACACCGTCGCCGCCAAACGTTCCTCGATCCTTACGGCCCAAT
GCATCGAGGTTGTCACATCCGAAGAGGTCTTGGAGCAAATGTACGAGAACCGAGTGGCGG
AACTAAGACAACTTCGTCAGGGATCCGAAGGCTGGATCAACAGGTGGGCAGCGTTCCTGG
CCGAGCTGCTGGCCAAGGGTGATGAGCCCCAGTGGGTCGTACAGCTCCTGCAAACAATCA
AAACCTGCCTATACTGGGTGCTCCCTGCCGCTATTCGAAAGGCCGATCTCCTGGGTCTGC
TTTCACAGGCGATCACCTCCTCCGATCTGAACGTCCAGGTCGAGGCAACCGAGTGTCTCC
ACACGCTCTTTACGCGGCCCTTTTCCCAGGACGAAGAGTTCCAGGCCATTGTAGGCTCCG
TCTTCCTGCCCCAAGGAATCTCCACGCTACATGGTGTTTATGACTCGATCCGTCTAGACG
TGAATAACCTTGACGAGCGAGCGTACGCGCTGACCAAGAAGTTTGTCGAGATGGTCGTGG
GACTGGGAGAGTACCTCAATGTGTACAAGGGCTGCCATCTGCCAGCTGGATCGGATGTGG
GTGGATACCTGCGCCTGGTTCTGGCCATTGTGCAGCACGATTCACTGCTCGTCTCGTCTC
TAACGCTACAGTTCTGGTGCTCTATTTTGCGAATGGACGAGGTCACAGGCAAACAAGAGG
CTGAACGACTGCTCCCTCAACTGCTGGAGATTGCCGCCGACAGATGCATCAAATACGAGG
ACGTGGACGACTCGCACGTGTCTGTGCAGTACCTGGAGATGGACTTCGACTCGCCTCCCG
AGCGCCATATGTTTCTGTGCAACTACAGACGGTTCATGGACGACATTGTACGGCTGTGCG
TATACCAGAACCCCGTGGACTCCATCACATGGCTGCAGCAACGCATGGCGCAGTTTTTCT
CGCAAGAAAATGTGGCCTGGCAGGTGTTTGAACGCGACCAATTTGAGGAATACAAGGGAA
ACCCCGCATTTTTCGTCTCCTACTGCCAGTTTAATCTTGTGGAGGCTTCTCTGCGGGGAG
TGTCGCGATGGCAGGCTCTTACAAAGGAGGATACGGACTCGTGGCGAGCCAAGGAGGCGG
AAATTCTGCGATTAGTGGAAAACTGGGGCACTTCCCTTCTGGGCATGAATCTGCGCGATC
CCCAGCTGGTACGAAAGTCGACCCAGACGCTGGTCCAGGTGGCGCCTATGCTCAAGGACA
GGACGCAGTTTGTGTTCCAGATTCTCGAGCGGGTCATTTCGGGATGCACCTACCAGCTTG
GTGGCAAGTCTCAGGACTCTCTGACCGATGACGAGCGAGCGCTGATCAAGGAGGTACACA
TTTCATGCGGCACCGAGCTCAACCGGCTGGCATACCTGATGCCTGACTCTCTGGCACCCA
TCTACTCTGATCTGGAGCGAGTTGTCATTGATTTGTTCCAGTCGAACAAGTTGACAGAGC
ACGAGGGAGTGGCGTTCAAGTCGTTCCTTCTGGTTGTTTCGCAGCGATGTTCTGCTTCGC
TGACTTCACCCGAGGAGAGAGCCCATCGGTTTGGCACCATTGTGGACCCTGTATTTGAGT
GCTGGACCGACCCAGGCACCGTAAAGGGCCTTACCGACCTGCAGTGGTTCATGGAGCATA
TCGGAATTGTTCGAATTGCGGAGTACTTCCGGTCTCGAGGAGTGACGTCTTCCACTAACC
TCCTCGAGGAGCAGATGGATGAGCCCGGCTTTCAGCTGCGAAACCAGCTCAAGGAGAAAT
GTTCGGTGCTTTTCCCCATTCGACAGACCCGGATCTTCTTGCAATACTCCATCGAGCGTC
TAGATCGAGACTCTCCAGAGTTTCTTGCTCTCCTGGCTCTCTGGAAGCCCCGAATCCAGC
CCATCCTGCCCCACATTCTGCAGCTCATCACACAGATCCAGGCGTACCACAATCCCAAGA
ATTGGACCACGTTACCCTCCGAGGTGCAGTCGTTCGTCAAGTACTCTGTGCAGGAGCGGT
TCTGGCAGGTGGGCGTGTCCATTAAGTCCAAGGACGAGTTTGTGGACGAAAACGTCAAGG
CCATGCAGTCGTTGCGAGACTTTGCCGACTCCATTGGCCACATTGTAAGATACACGAGAG
AGTACTCGTTTTTCGCCGTATCGTCCATCTCTGCTCTTAACGAGACTCTGTACGAGATTC
CAGACATCGCCACCAATCTGTGGAAGGCTCTCGTTGGTGCTGACGACGGAGTCGGCATCA
CTCTGCACTCTTGGCGGCATATGGTGTCCATGGTTGTACGGCCCGTCATCAAGAACTGTC
CCTTGAACCTGGTGCCCGAATTCATGCCCCAGTTTCTGCCCCATGTGCTGACCAAGCTGG
ACGAGGTTCTCACCACCAAGTGGGGTGCTATGACCAACCTGCAGCTGCCGTCAGCGGGTG
ATGACAACTACGACGCCATGGTGACCGCTGAGGCTGCTGATGACGAGCAGCTGTCCGATG
AAATGATGGATGAGCATCTGCTTCGACAGCTGACCAACGTTGTCGGCCGATTCCTAATCG
ATCTAGTGGGTCATGAGAAGGCTTCCACTCCCAAGACGGCCCAACCTCCTGCCCCTGGAG
CTCCTCCTTCCAACGCGAAGGTGCTCAAGAAAGTGACACTGACCAACAAGGACATCCTGG
GTCCGTTCTTGGTGCTGTGCAACCACGTGATTGGGTTCCGAGACTCGCGATGCTCATTTA
ACGTGTGCTTATTGCTGCGAGGCATTCTGCCCCTGATTCTTAACAAATGGGGTGAGCTGG
ACGATTTCCTGGTGAGCGAGGTAATGAAGACGTGCATCCGCATTATCCATGACCCCTTTT
ACGTGGAGGTGCACTCCGAAGCCGGCTACATCGTGACTCTCATCTACACATACATCTCCA
ACGAGTCGGACTCCCCCGCCAAGCTGCTGCTAGCCTACTACAATCACCAGCAGCAGGAAG
GAGGACACAGCAGTGTGACCCCCCAGGATATTATCAACTTTGAGAAGCAGCTGAGCAATA
GCAACCGGTCGTTGCGACAACAGCGAGGAGTGGTTCTGGACTTCCTCATGTACCACCATC
CCATGCGACCCTCGGAGGCCGACGGAGGACAAAACAGCCGACAGGCCCAGATGCAGAAGC
TGGCCAAAAAGCAGCAGGCCGCACAGCGAAAGCAGTTGCTCTCTAAGAAGACAGATACCG
GTGATCTGCTCATGGAGACGGAGGAGGAGGCCGGGCTCGGCAACCTCTTTGGCCAGTAAA
AACATATTAAAATTGTATACATTAATGATC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D04444g_CDS-001

Protein length: 1289 aa.
Product: Karyopherin, putative

>YALI0D04444g_CDS-001 MEEQAIQQIVSSLELVHDPRTSNRQRQEAQSLLETIKQNEDAPFWGWQLASPKQGYSPVV
RHFGLGLIQHAIQYMFLYYDAPRKAAVRDWVIDLATNVTADDPHYIKEKLCVLWVNIAKR
VWGVDKPTDTDTNNNTDSNNTDNNNNNNSNSSTTTDSSWKNMDALLVQMWDANLQTREIS
LGVFRTLFEDIWILEDTVAAKRSSILTAQCIEVVTSEEVLEQMYENRVAELRQLRQGSEG
WINRWAAFLAELLAKGDEPQWVVQLLQTIKTCLYWVLPAAIRKADLLGLLSQAITSSDLN
VQVEATECLHTLFTRPFSQDEEFQAIVGSVFLPQGISTLHGVYDSIRLDVNNLDERAYAL
TKKFVEMVVGLGEYLNVYKGCHLPAGSDVGGYLRLVLAIVQHDSLLVSSLTLQFWCSILR
MDEVTGKQEAERLLPQLLEIAADRCIKYEDVDDSHVSVQYLEMDFDSPPERHMFLCNYRR
FMDDIVRLCVYQNPVDSITWLQQRMAQFFSQENVAWQVFERDQFEEYKGNPAFFVSYCQF
NLVEASLRGVSRWQALTKEDTDSWRAKEAEILRLVENWGTSLLGMNLRDPQLVRKSTQTL
VQVAPMLKDRTQFVFQILERVISGCTYQLGGKSQDSLTDDERALIKEVHISCGTELNRLA
YLMPDSLAPIYSDLERVVIDLFQSNKLTEHEGVAFKSFLLVVSQRCSASLTSPEERAHRF
GTIVDPVFECWTDPGTVKGLTDLQWFMEHIGIVRIAEYFRSRGVTSSTNLLEEQMDEPGF
QLRNQLKEKCSVLFPIRQTRIFLQYSIERLDRDSPEFLALLALWKPRIQPILPHILQLIT
QIQAYHNPKNWTTLPSEVQSFVKYSVQERFWQVGVSIKSKDEFVDENVKAMQSLRDFADS
IGHIVRYTREYSFFAVSSISALNETLYEIPDIATNLWKALVGADDGVGITLHSWRHMVSM
VVRPVIKNCPLNLVPEFMPQFLPHVLTKLDEVLTTKWGAMTNLQLPSAGDDNYDAMVTAE
AADDEQLSDEMMDEHLLRQLTNVVGRFLIDLVGHEKASTPKTAQPPAPGAPPSNAKVLKK
VTLTNKDILGPFLVLCNHVIGFRDSRCSFNVCLLLRGILPLILNKWGELDDFLVSEVMKT
CIRIIHDPFYVEVHSEAGYIVTLIYTYISNESDSPAKLLLAYYNHQQQEGGHSSVTPQDI
INFEKQLSNSNRSLRQQRGVVLDFLMYHHPMRPSEADGGQNSRQAQMQKLAKKQQAAQRK
QLLSKKTDTGDLLMETEEEAGLGNLFGQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG