YALI0C06281g

Overview

Description similar to uniprot|Q12600 Candida tropicalis SIS2 protein (Halotolerance protein HAL3)
Locus type CDS
Locus tag YALI0C06281g

Location

Species Yarrowia lipolytica Positions 816062..817827
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 1766 (nuc.)
Previous locus YALI0C06259g Next locus YALI0C06303g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C06281g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C06281gYALI0C06281g_mRNA-001YALI0C06281g_CDS-001

Nucleotide sequence

 

>YALI0C06281g
ATGGCGAAACCGACCTTCAAAATCGAAACGCCCCACCCGTCCAAGTTTCTCGACGACAAG
GGACTCGACTTCCGCAAGGAGCACCCGTCGCAGCAGCAGGGAGACAAGCCTCAGGGCATC
ATGCAGAAAAGCAACCTGGCGGCGTCGCTGGACTCGCTGGACGACCCCAAGGACCAGCTC
AAGCGTGAGCTGAGCCGCGACTCGGCCAACGAGATTCACATTGCGCTGCCCGAACCCCGG
TCGCGGCAGCCCAGCATCATCGACACCTCGGTCAAGCACGCCAAACAACCCAGCGTGCAC
GCCCATTTCAAGCTCGACGACATTGACCAGCACGCCAACACCCGCAGCCGGTCGGGGTCT
GCCAGCGGCCGCAACCAGACCGTCTCGCCAACCCAGCAAACCCCCAAACAAATCTCCATT
GTCGAAAGCACCCTCAGTAACCCGGCTGGAGGCCACCCTCCCCCCACAGAGATTCCCATC
GCAAGGCGCCAGTCCACGGCTGTGGGCGAAGACACGACCCAGCAGGGAGACCCACGGTTG
CCCCAGGACGACGGCAAGATCCACATTCTGCTGGGCGGTACGGGGTCGGTGTCAACCTCC
AAGCTGCGTCTCATAGTCAACAAGCTGGAGGAGATTTACGGACGCAATCGAGTGGCGATC
CAGATTGTGCTCACCTCGGCGGCTGAACACTTTGTCAGCCGCGGCGAGTTCCATACAGAC
GTGATTCTGTGGCGAGACAAGGACGAGTGGTCGACCTGGAAGTCCCGGTCGGACCCCGTA
CTGCACATTGAGCTCAGACGGTGGGCCGACATTCTCGTCATCTGTCCTCTGTCCGCAAAC
ACCCTGTCCAAAATCGCCATTGGCCTTTGCGACAACCTGCTTACCAATGTCGTGCGAGCA
TGGAACACACAGTACCCCATTCTGGTGGCTCCTTCCATGACGTCGTATGCCTATAACTCA
CCCGTGACCAAGCGCCATCTCAAGGTTATCAAGGAGGAAATGCCCTGGATCGAGGTACTT
CGACCAGTCGAAAAGGTGGTGGGCTCGTACGGAGAGATTGGCATGGGAGGCATGATGGAC
TGGAACGAGATTGTTGACAAGATTGTGCTCAAGCTCGGTGGCTACCCGGAGGAAGAGGAT
GACGACAACGGAGACGATGACGATAATGGAGACGACGAAAACGGCGACGATATCGATCTC
GACAACGTTGACAATGACGACGATGACAACGACGACGATGATGATGATAACGATGACGAC
GACGATGACGACGATAACGGAGATGATGACGATGACCTGAGAGCCAAACGAGAACGCCGT
CAGACCCGAAAGGCCCTCAACAAGCTGGACTACGACTACGACGAGGACGAGATGGATAAA
GTCATCAACAAGTTGTCTCTTGCAGATCAGGATGAGCTGATGAAGCGAAAGTTTAGTTTA
CGCGAGAGTTCCAGTTTCACCGGGTAGCCCTGATTCGTCGGATGCTCCCATCACCACCAC
TTTCGCTTTAGACTAATTTTGAGATTTTGCTGCAGCACACGAGTAGAGACATCTAGGCTA
GGTCAGTAATGTATGCTTGATGTAGGGCGGTGCCCGTTGCTGGATATTGGACTTGATACT
TTTGGTAGGCTTTGACATGGTATGTTTCAATGGAGTAGCTAGACCTAGACAGACAAGACT
ATGACATAGTTTCCACACTTTGTCATAGAAAATACAGCAACATGTCTACATTTGTGTAGG
AAACGAATGAATTAAAGAGGTATATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C06281g_CDS-001

Protein length: 489 aa.
Product: Halotolerance protein, putative

>YALI0C06281g_CDS-001 MAKPTFKIETPHPSKFLDDKGLDFRKEHPSQQQGDKPQGIMQKSNLAASLDSLDDPKDQL
KRELSRDSANEIHIALPEPRSRQPSIIDTSVKHAKQPSVHAHFKLDDIDQHANTRSRSGS
ASGRNQTVSPTQQTPKQISIVESTLSNPAGGHPPPTEIPIARRQSTAVGEDTTQQGDPRL
PQDDGKIHILLGGTGSVSTSKLRLIVNKLEEIYGRNRVAIQIVLTSAAEHFVSRGEFHTD
VILWRDKDEWSTWKSRSDPVLHIELRRWADILVICPLSANTLSKIAIGLCDNLLTNVVRA
WNTQYPILVAPSMTSYAYNSPVTKRHLKVIKEEMPWIEVLRPVEKVVGSYGEIGMGGMMD
WNEIVDKIVLKLGGYPEEEDDDNGDDDDNGDDENGDDIDLDNVDNDDDDNDDDDDDNDDD
DDDDDNGDDDDDLRAKRERRQTRKALNKLDYDYDEDEMDKVINKLSLADQDELMKRKFSL
RESSSFTG*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG