YALI0C05555g

Overview

Description similar to uniprot|Q7ZXE3 Xenopus laevis U5 snRNP- specific 40 kDa protein
Locus type CDS
Locus tag YALI0C05555g

Location

Species Yarrowia lipolytica Positions 710290..711434
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 1145 (nuc.)
Previous locus YALI0C05542r Next locus YALI0C05577g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C05555g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C05555gYALI0C05555g_mRNA-001YALI0C05555g_CDS-001

Nucleotide sequence

 

>YALI0C05555g
ATGTCGCTGGTCAAGAAGCCGAAAACCGAACTGTCGACGCATGTTGCGTCAGATCACGTG
ACAGAAACGTCGATCCAGCTGATTGGACACTCGTGCCCGGTTCTGGCGTGTGATTTGAGT
GCAGACAAGGAGGTTCTTTCAGGCGATCTGGAGGGACTGGTAAAGCTGTGGAAGCTGTCA
CGTGATGACACGGTTGAGCAGTACGAGGTTGGAAAGCACAAGGGAGCAGTTTTGGGCGCG
ATTTTCCTCAAGCATCGTATGGTTACCTGTTCTACAGACACAACGATTTCCATTTTTGAT
GGCGGACACAAGATCCGGAATTTCAAGGGCCATACGGCTGCTGTGAACGTGGTTTGTGGA
GGACAAAACGACGAGCTGATCTACAGTGGCTCGGATGATGGCAGTATTGGCATTTGGGAT
CCTCGAGAGAAGGATAGCGAGTCACGTGTGATTGAAACGAATTATCCCGTGATTGCCGTG
GCTACAGATGGACACGAGACGGTGTGGAGTGCAGGAGTTGATGACGTGATCAGCAGATGG
GACTTGCGGATGAATCAGCAGATTGATTTCCAGGGCGCTGATGGACACACAGATATCGTC
ACGAGTCTGAGCTACAATCACAACCGGTTGGCAAGCCATTCTCACGACAATACCGTGCGA
GTTTGGGACACAAAGCCGTTTATGGCTGACGAAAAGTCGAGAGAACTGTTGTGTTTGACT
GATGCTCCTAACGGTATTGAGCAGGCGACTCTCAAGGCGAAATGGTCTAGTGATGGAGAG
CATATCATTTCCGGGTCTGCTGATCGAACAGTGGTGATTTGGAAGGGCGATACTGGTCGT
CTGGTGCGAAAGGTCGGTGGTCATAGTGGCTGTGTTAATGATGTGGCTATGGTTGACAAA
TGGTATGTTAGTGCCAGTTCAGATGGTACGTTGGTGGTGTCGACCCTCTAGTGGTAGCGA
TGGTCAGAGCGACCAAAAACATGATTCCCCCAAAAAGCGACACTAGGAGGGGACAACAGT
CTACTTTGAGCCTAGGTCTCGATTGGTACACACCAGTGTAATGCTCTAACCTCAACTTCA
GGCACTGTATGTACCGCAACATGCGATCTAAACCGCGTGGTAATAAATTGTATTTATAAT
GAATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C05555g_CDS-001

Protein length: 317 aa.
Product: U5 snRNP-specific 40 kDa protein, putative

>YALI0C05555g_CDS-001 MSLVKKPKTELSTHVASDHVTETSIQLIGHSCPVLACDLSADKEVLSGDLEGLVKLWKLS
RDDTVEQYEVGKHKGAVLGAIFLKHRMVTCSTDTTISIFDGGHKIRNFKGHTAAVNVVCG
GQNDELIYSGSDDGSIGIWDPREKDSESRVIETNYPVIAVATDGHETVWSAGVDDVISRW
DLRMNQQIDFQGADGHTDIVTSLSYNHNRLASHSHDNTVRVWDTKPFMADEKSRELLCLT
DAPNGIEQATLKAKWSSDGEHIISGSADRTVVIWKGDTGRLVRKVGGHSGCVNDVAMVDK
WYVSASSDGTLVVSTL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG