YALI0C03399g

Overview

Description some similarities with uniprot|Q6M9I3 Neurospora crassa NCU00434.1 hypothetical protein
Locus type CDS
Locus tag YALI0C03399g

Location

Species Yarrowia lipolytica Positions 448598..452373
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 3776 (nuc.)
Previous locus YALI0C03391r Next locus YALI0C03421g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C03399g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C03399gYALI0C03399g_mRNA-001YALI0C03399g_CDS-001

Nucleotide sequence

 

>YALI0C03399g
CGACTTTCTGGGCGACGAAAAACGGCAAACAGCCTAGTTGACGAGCAACACTGAGCGACA
CAGTGACAGTACCAGACCACCAAACCGCCACAGTTGCTACCAACAAAATACCGACGGCTA
CTACAGAGTGAGTACTACCACGAGGGAGTGTATGGTGGAGACGATACCTGCGTGCCAAGG
TCATGACGTATGGTATTTTTTCGCGCCACTGATCGGTTGTCTACCTAGTGAGATTCATAT
CAGCGGAACCAACGATACCTCAGATGTACAGAAGGATGAACAAAAGTCGCACTGTACAGA
AGCAGAGCTCAAGCGGCTGAAAAGTTGTGGATAGAGACAGAATGAGCTGCACCTGCCTGT
TTGGGCTGGTAATGGACTCAAAGGTGATAGTCTATGGGAGACTATACTTCTGCTACAAGA
GCTACTGTTTTTCATACGCACGTATCACTATCTTCTGTTTGAAAACGATTCATTCCGACA
TGTGCCATAATGGGGTGTACAATGTGTCAAGGGAGCGTGAGATGTCGGGCTGAGGGCTTT
TCTGTGCTATACTGTTTCTGGTACACAGGTGCTACCCATAACCAGCTGCTCCAAGCAGAT
CCATCGCTTCTTCTCTGATACTCTTTCTGTCGCACTGACCGTCCACTCATCTACCGATAA
ACCGTGGCTTCACAAACACGTGTGATCTACTAAATCATGCGATCTATCTGAGACAGCATT
TCCAATAACACCAACACCTTCGGTGGATCAGAACACTCTTGATCCCCTGCTGTTACTGCT
CTCATGCCGTTCTTCCGCTACTACTCGACAGCAACTTCTCATACAACGTACTAACTCAGA
CTCTAACAACGTGATACACTCACTCTGATCACACCCTTTACTTCTGATTCTACTTTACCT
CCTATTCGGCTCTATCTTCTTACCTCTCAGGGCCCCGTCTCCCCCACCAAGACCAGTGTC
TTGTCTACAACACCACCAAAATTCATTCTCTAATCTACTACAGCCCACAATCCGCCAATA
TGCGCGGAGTCTCCACTGCGGATCTGTTGGTGCGCAGGAGTCCCAGTACCAGCGCTGCCA
ACAGTCAGACCAACGTTTCAGAGCGACACAGCCACAGCAGCCACAGGAACTCCGACAACT
CCGTCCACAGAAGCGAAAGCCACCGCAACTCGGAGAACAGTAATCAAAATAACTCTGCAA
GCAAAATACAGCTTCCCACAGTGTCTACGCACGCGCCCTCAGACCAACCGGTGAATCACA
CCCACCTAAACCTTTCCTATGCATCGTCGGCAATTCAAAACTCCGACTTCCGAACCCGGA
TGAATGATTGTCACGACATCCACGTGAGCGAAAGCCGGGCGTTTTTTGGAGTCTACGACG
GCCATGGAGGCGACGCAACTGCTCTGTGGTGCAAATCGAAGCTCAGACCCTTGATTTACG
CGGCCCTGGGTGCTGTCCATGAACGTCCAGTGGGCAACAAACCCCGTCCTAGCATGTACG
CCCGTGCTATGAGTGTTTCACAGTCTGTGGTGACAGATACGACTAATACGAGTGGTGCCA
ACAATGCAACAAATGCAACAAATGCGCCAAACACCAACAATCTACAGGTTCCTAACACAA
ACAATAATACAACTCCCTCTCAACCAAGATACTACACCCCCGACCTGTCGCTTCGAATAT
CAGCTGCCTTCTACAAACTCAATGAGTGGATCGTGTCGAGATCGGGATACTCGCTTGGAG
GCGCATGTGCCACAGTGGCTTACATTGAACATACTAGACGCGAATCGTTGGCCCAGTCGT
CCAATAATCACGATGGAAGCATGATAACACGTCTCGTCGTAGCCAATGTGGGTGATAGTG
TGTGCGTCTTGAGCCATAAGGGACGAGCTCAACGTATGACTGCAGACCACACGTTGTCTG
CCCCTTCAGAACGTGAAAGAGTCGTGGCTAGTGGAGGTCTGATCACCCACAAGAAGGTTG
ACGGTCTCCACAGAGTCACCAGATCTCTCGGAGACAAGAGCTTCAAACGGTACATTTCGT
CCCGGCCATTTGTATCCGATACCGTTCTTGGGGCTGCGGATGAGTTCCTCATTCTGGCCT
CAAACGGCCTCTGGGATGTTGTTGACGATCAAACCTGTGTTGATTTGATTCGACATGTTG
ATGATTGTAAAGTTGCTTCCGACACTCTGGTCTCATATGCGCTCAAACATGGAGCAGCCG
ACAATGTGACTGTTATTGTGGTCCGGTTTGTGTCCTCAGACATGTGTCGAGAATACCCTC
AACTGGGTGAAACTGCCTCGATTGTGTCTTCTGAAGGCGAAAACCGACGTCTTCTGTCCA
CTCGCCGGGCCTTTTCTCAATCCGGGTACATTCCTGGTCCCGGCCTGGCCACTCTTAACG
AGTCCAAGCGTGTTCATGACCGAGTGTCTCGCTTCAACATGTTCTCGACCCTCACTCGAA
CCCACGATGCCATTTTCGACAACCCCGAAAATTACAATGTGATCATGGCTGCTGCAGAAG
TATCTCTGAAGCTGCGCGGTCGAGTTGGACCTCTGGTATCGAACTCCTCCGAGAGGATGT
CCGAGCGAATGTCCTCGGATAGAATGAACAGTATTGTTTCCATGGGGACAGTGTCTTCTT
GTTCTCCTCGGTCTTCGTTGACCTACTCTGACGACGAGTCTACCACGCCAGCCACGTCCA
TGGCAAAACGTCCTTCTATTTCCTCATCTTCTAGTTCAGGCTCCTCTTTCAACCGACGAT
CTCAGTACATGCGATCTCGATCCCAGGTGTCTGGTATTGCTACTTTTGAGCAGCTGGAAG
AGATGGAGGAGCTGGACCGGCTCAGAAGCGTTAACTACTCGGGCCTGGCTCAACCAGCTG
ACCTGCGGGCCATCACAGACACCGAGTCTGCCATTGAAGAGGACGATGACGAGGTGTTGG
AAGAGGTGGACACGCAGCTGGAGCTGCCTCGAAGCAAAAAGGTGCTGTTTGCAAACTCCA
CCCGGTCTCAGAGATCGTCTGCATCTACGCTGGAGGTTGCTAGAACGCACTCTGCAGCAT
CCACAGCGTCTTCTTCGGCCACCATTGATGACGATACCGTTGCTGAGCGGTTCACTAACA
TGTTCAACAACTCGCGACCTGCCCGAAAGATGTCGCGTGCGTTGGAGAACATTTCGTTTG
AGCCGCGACGGGGATCTTTCGAGAAGGAGGAGCGGGACTTTGATGGCTCCAACTCATCTA
ACTCTGCTTCAAACACGCCCTCCGGCACTCCTTCGGCCTCCCAGTCGTTCATTTCTCTAC
AGAGAGAGCTGCGAGACAAGGCCCATGTTGCCAGTCACCATCTGACAGGAGCTGCTTCGG
CTGCCACTGGACTACGACACCCCCATATTGGAGGATTTTTCCCTGAACATCATCACAATC
ACAGCCACAGCCACAGCCACAGCCACAGTCACAGTCACAAGAAGAGCAACTCTGTGGCCA
TTCCCTATCCTGATAAGGATGGCTCTGGTAGCAACTCTAGAGAGGGTTCAAAGGAGAGAA
GTTTCAGTGTTCAGCTCGGAAACGCTCCTCACCATATCAGTCATCTGTTGCATGGTTCCA
AGACGAAGATGTAACGGGACCGACAGCGCCCAATTTACACTACAATCCAACCCCCCCCCC
CCCCCCCCCCCCCCCCCAGCTCGCAATCATTGCTGAGGAAAACATAGAGCTCCATGAAGG
GAGAAAAATAAGCCCCATAGGGCAGTATTTATATTAATGTAATTTATTCTAAGCTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C03399g_CDS-001

Protein length: 865 aa.
Product: Conserved hypothetical protein

>YALI0C03399g_CDS-001 MRGVSTADLLVRRSPSTSAANSQTNVSERHSHSSHRNSDNSVHRSESHRNSENSNQNNSA
SKIQLPTVSTHAPSDQPVNHTHLNLSYASSAIQNSDFRTRMNDCHDIHVSESRAFFGVYD
GHGGDATALWCKSKLRPLIYAALGAVHERPVGNKPRPSMYARAMSVSQSVVTDTTNTSGA
NNATNATNAPNTNNLQVPNTNNNTTPSQPRYYTPDLSLRISAAFYKLNEWIVSRSGYSLG
GACATVAYIEHTRRESLAQSSNNHDGSMITRLVVANVGDSVCVLSHKGRAQRMTADHTLS
APSERERVVASGGLITHKKVDGLHRVTRSLGDKSFKRYISSRPFVSDTVLGAADEFLILA
SNGLWDVVDDQTCVDLIRHVDDCKVASDTLVSYALKHGAADNVTVIVVRFVSSDMCREYP
QLGETASIVSSEGENRRLLSTRRAFSQSGYIPGPGLATLNESKRVHDRVSRFNMFSTLTR
THDAIFDNPENYNVIMAAAEVSLKLRGRVGPLVSNSSERMSERMSSDRMNSIVSMGTVSS
CSPRSSLTYSDDESTTPATSMAKRPSISSSSSSGSSFNRRSQYMRSRSQVSGIATFEQLE
EMEELDRLRSVNYSGLAQPADLRAITDTESAIEEDDDEVLEEVDTQLELPRSKKVLFANS
TRSQRSSASTLEVARTHSAASTASSSATIDDDTVAERFTNMFNNSRPARKMSRALENISF
EPRRGSFEKEERDFDGSNSSNSASNTPSGTPSASQSFISLQRELRDKAHVASHHLTGAAS
AATGLRHPHIGGFFPEHHHNHSHSHSHSHSHSHKKSNSVAIPYPDKDGSGSNSREGSKER
SFSVQLGNAPHHISHLLHGSKTKM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG