YALI0C03179g

Overview

Description similar to uniprot|Q96VQ7 Emericella nidulans Serine palmitoyl CoA transferase subunit LCBA
Locus type CDS
Locus tag YALI0C03179g

Location

Species Yarrowia lipolytica Positions 425290..427052
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 1763 (nuc.)
Previous locus YALI0C03157r Next locus YALI0C03201g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C03179g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C03179gYALI0C03179g_mRNA-001YALI0C03179g_CDS-001

Nucleotide sequence

 

>YALI0C03179g
ATGGAAACCGTAGTGACGACAGCGACTATTGCCGCTGCGGCCGTGTCACCCTCTCCGACA
CCCTTCACCACTCAGCATCTGGCCGGCGAGCAGATTCTGTCTAAGCTGCATGCCATTGCC
TCCTCGGCAGCATATTGGGGAGAGAAGCTGCCCGGCTCGGCCGTGGTCAAACGATACATT
GTGTCCTCGCATCAGAATGACCCTGTTAGAACCATCTTCGAGCTGCTCTTCTTCCTGTTT
GCCGTACGATACTTTGTGGCGTCCCGATACTCGACCTCTAATCCCCACCACGTCAAGTTT
ACCGAGGCCGACATTGACGAACTGGTCGCCGAGTGGGAGCCCGAACCTCTCGTACCCAAG
ACTACTGTCCTGGAGGAGCTGGACATTGGCTCAATCCCGCTGATCCACGGCGAATCGGGC
CCCGTGGTTGACGTAGAGTCGGCCCGGGTCGGACACGTCAAGCGAGCCACCAACCTGGCC
TCTACCGACTTCCTGGGCTGGGCACGTGACCCCGTCATCAAGGAGCGGGCCGTCCAGATT
ATCCGTGAGTACGGAGTCGGCTCCTGTGGCCCCCCCGGTTTCTACGGAAACCAGGACATT
CACGTTAAGTGTGAGCGGGACCTCGCCCGGTTCTGCAACTCCGAGTCTGCAATTCTCTAC
GCGCAGGCCTTCAACACCATGTCTTCTGTCATCCCCTCGTTCATGAAGCGAGGTGACATT
GTCATTGCCGACGACCGAGTGGCCACTTCCACCCAGAAGGGTCTGCAGGTGTCGCGAGTC
ACCCTGCGATGGTACAAGCACAACGACATGGAGGACCTCGCACGTGTGCTGGCCAAGACC
AACCACGAATTCCGAAAGGCTCCCCTCACCAAGCGATTTATTGTCACCGAGGGTCTGTTT
GAGAACACTGGAGACCTCTGTAACCTCCCTGAGATCATCAAGCTCAAGTACCAGTTCAAG
TACCGACTGCTGCTGGACGAGTCGCTGTCATTTGGTCTCGTTGGATCTACCGGACGAGGA
GTGCTGGAGCACTTCCAGGAGAACGGACACCCCGAGCTCAGCCGACAGCAGATCGAGCTG
ACCGCAGGCTCCATGGCCATCGCCTTCTCGTCAGCTGGTGGCTTTGTGGCCGGCTCCGAT
GCCGCCGTCGAGCATCAGCGAATCGGATCTAACGCTGTCACCTTCTCGGCTTCCATGCCC
GGATACCTTGCTGCCGCCTCTTCGCAGGCCATTGAGCGATTGGAGGAGGATAACTCGCGT
GTCGTCAAGCTGCGTGAGAACACCACTCACTTCCGAACCTTTTTGGAGAAGCAGCTGCAG
GCCGCCCGAGTTCTGGGCTCCGTGGTCGAGTTTGTGTCATCTCCTCAGTCGCCTCATATC
TTGATCAAACTGAGTGATGACTTCCGGCCCGAGACCCTGACGTCGTTCGTTGCTGCCGAG
GAGCTGCTTCAACAGATTGTCGATCTGTGTCTGGCCGAGGGTGTTCTCATCACACGTCAC
AAACGGGTCCCCACGCACGAGATCATTGCGCTGGAGAGCATGCTGCGAATCGAGGTGTCT
GCTTCATTGAGCACTCAGCAGCTGGACGAGTCTGCAAGCATCATTGCAGGTGTTGTCAAG
AGCATTTCCAGTGCGTAAACACATACACGGCGTACGACGAAGCATGATTGCGTGAATCTG
AGAGGTCCGCGCATAGGAACAGCCCCAGAGATTTTAAAAGAGGTGCAAGTTAGGAATAGA
TCATTAATATATCATAAGAACAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C03179g_CDS-001

Protein length: 546 aa.
Product: Serine palmitoyl CoA transferase subunit LCBA, putative

>YALI0C03179g_CDS-001 METVVTTATIAAAAVSPSPTPFTTQHLAGEQILSKLHAIASSAAYWGEKLPGSAVVKRYI
VSSHQNDPVRTIFELLFFLFAVRYFVASRYSTSNPHHVKFTEADIDELVAEWEPEPLVPK
TTVLEELDIGSIPLIHGESGPVVDVESARVGHVKRATNLASTDFLGWARDPVIKERAVQI
IREYGVGSCGPPGFYGNQDIHVKCERDLARFCNSESAILYAQAFNTMSSVIPSFMKRGDI
VIADDRVATSTQKGLQVSRVTLRWYKHNDMEDLARVLAKTNHEFRKAPLTKRFIVTEGLF
ENTGDLCNLPEIIKLKYQFKYRLLLDESLSFGLVGSTGRGVLEHFQENGHPELSRQQIEL
TAGSMAIAFSSAGGFVAGSDAAVEHQRIGSNAVTFSASMPGYLAAASSQAIERLEEDNSR
VVKLRENTTHFRTFLEKQLQAARVLGSVVEFVSSPQSPHILIKLSDDFRPETLTSFVAAE
ELLQQIVDLCLAEGVLITRHKRVPTHEIIALESMLRIEVSASLSTQQLDESASIIAGVVK
SISSA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG