YALI0C01353t - Ylli_pol

Overview

Description Ylli relics, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli
Locus type mobile_element
Gene name Ylli_pol
Locus tag YALI0C01353t
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 182589..184019
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 1431 (nuc.)
Previous locus YALI0C01331g Next locus YALI0C01375g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C01353t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C01353tYALI0C01353t_mRNA-001YALI0C01353t_CDS-001

Nucleotide sequence

 

>YALI0C01353t
TTCTCACAGTCTCACACAGGAAAAGCCACACCAGCGCGTCGACTGCCGCTTTCCGACAGG
CCAAGCTTGGGGCTACGCAGCCTCCCCCACCATGCGAGACGCAATCAGAGCTTCTTTCGA
GCTCAACAAGCCCCTCACCGCGGAACATGCCAACCCTCGAGAAGATCACGAGCCCTCTAC
AACAGACACAGTTAATCACAGAATCTGGGAACGAAACCAGGTGAACGTGAGAGCAGCAGA
ATCTTTCCGGGAAGCACACGTCGACATCGCAGCCGCGAGACGATACCATCCGGTCAGAAT
GGTGTCCACAGCGGAAATCGACCACCTCCGGTGGAGCATGGGACCACTTACTCTAGAGAA
CTTCATGTTTCACAAGACCTCGTCTCCCGACTTGCCAAACTTCCCACACACACTTGCACG
ACCGAAGAAGTGGACTCAACGAAGCGACTACGGGGGCATCTCTGACGACATGGTCTGGCA
GGAGGTAATGCATGACCTTCGAAAACACTACATCGCCGACGCCAACAAAGCACAAGTTCT
TCACCTCATGCGGATATCTCGACTTCCGCTCGTGAAATGGAGATACCCTGACGACCACGT
TTTCACCAAGAAGAATCCAGGATGCGGGCTCTGTGATAAGGCCATCATTCAGGATCTGCA
CGAGCATATCTTCTGCAAGTGCGAAGTTCTTCTTTCCATGTTGACCAGGATGAAGATTCC
GTCAGTGGACTCTCTAAAGGACTGGATCTTTACCGAGTCGAAATGTGGAGTACTCCCCTC
TTTCCCAGGGCATGTGAACAGTGACGCCCCCCGGAAACATCAACAAGTCAAGACACGCAA
ATATCTGCGGGAATTGGCTTATGGGATCTGGAAGATGGAGAGATCCCTCCGGTACTCAGG
GGACGACGCCACCCTGGGACATGTCCAACAGGGTTTGCTTCAATTCCTGAAGGAAGCCCA
GATGTGTTTCTACGATGGACAACCGCCAGCACTTCACGATGAGCGAGAGTAGACACAGTA
GCAAGCGTAAAAGGCGGCCGAGGCCACCGAGAGAACAGCGTAGCAGGGCGCGTAGTCACC
ACAGGGGACGCAGAACCAAACCAATGACGAAGAAGAACCACAAGGAGAAGTTTTCAAAGG
CAATGCAAATGAAGAGGGCAATGGAAGGATTGAGATTAGAGAACTGGAGACTGGAGTGGC
GTTTTCCCGATGAACGAACAAACACGCGAAGCTATGTGGACCAACATACAACACGGACTG
AACCAGGTTTTTTTATGATTTTTTTACTGGAAATAGGTACGTGCCAAGTTGGACCATGAC
ACTAAACGTGTTTAATTAGTAATATTCGTGTAAGCGTACATTCATTTCAAAGGTTATTCT
TTCACGGCAAAGTTATAATTAAATGAATGTATATGCAGAAAAAAAAAAAAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C01353t_CDS-001

Protein length: 337 aa.
Gene: Ylli_pol

>YALI0C01353t_CDS-001 SHSLTQEKPHQRVDCRFPTGQAWGYAASPTMRDAIRASFELNKPLTAEHANPREDHEPST
TDTVNHRIWERNQVNVRAAESFREAHVDIAAARRYHPVRMVSTAEIDHLRWSMGPLTLEN
FMFHKTSSPDLPNFPHTLARPKKWTQRSDYGGISDDMVWQEVMHDLRKHYIADANKAQVL
HLMRISRLPLVKWRYPDDHVFTKKNPGCGLCDKAIIQDLHEHIFCKCEVLLSMLTRMKIP
SVDSLKDWIFTESKCGVLPSFPGHVNSDAPRKHQQVKTRKYLRELAYGIWKMERSLRYSG
DDATLGHVQQGLLQFLKEAQMCFYDGQPPALHDERE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG