YALI0B21846g

Overview

Description similar to uniprot|E9CWP5 Coccidioides immitis TCRP 4-hydroxyphenylpyruvate dioxygenase 4HPPD HPD HPPDase
Locus type CDS
Locus tag YALI0B21846g

Location

Species Yarrowia lipolytica Positions 2865659..2866930
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1272 (nuc.)
Previous locus YALI0B21824g Next locus YALI0B21868g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21846g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21846gYALI0B21846g_mRNA-001YALI0B21846g_CDS-001

Nucleotide sequence

 

>YALI0B21846g
ATGTCACCTTCCGTCGAAGTCACCCCTGCACACACACCCACCTCGTACGAGGTGACCAAC
TCGCTAGACAGCTATCGGGGCTATGACCACGTCCACTGGTACGTTGGTAATGCCAAGCAG
GCCGCCTCCTTCTACATCACCCGAATGGGATTCTCTCCCATCGCCTACAAGGGTCTTGAG
ACTGGCTCTCGAGACGTGACCACCCATGTCGTGGGCAACGGCCAGGTCAGATTTGCATTC
TCGTCTGCCCTGAGAACCGGAGAGCCCCAAGCCGACGAGATCCACGCCCATCTGGTCAAG
CACGGTGACGCCGTCAAGGATGTGGCCTTTGAGGTCGACAATGTGGAGCAGCTTTTCTCT
GCTGCTGTCAAGAAGGGCGTCCGAGTGATTTCCGAGCCCAAGGTGCTCAAGGACGCACAT
GGCTCCGTCACCTACGCCGTCATCTCTACCTACGGAGATACCACTCACACTCTGATTGAG
CGAGGCAGCTACGAGGGCGCCTTTCTTCCCGGATTTGTCGACACCTCCGCCAACAAGGAC
CCCATCGCGGCCTTCCTGCCCAACATTGAGCTCATGCACATCGACCACTGCGTTGGAAAC
CAGGATTGGAACGAGATGGATAACGCATGCAAGTACTACGAGGAGACTCTGGGCTTCCAC
CGGTTCTGGTCGGTCGACGATAAGGACATTTGCACCGAGTTCTCTGCTCTCAAGTCCGTG
GTCATGGCCTCACCCAACGAGAAGATCAAGATGCCCGTCAACGAGCCGGCCGTGGGCAAG
AAAAAGTCCCAGATTGAGGAGTACATTGACTTTTACGACGGCCCCGGTATCCAGCACATT
GCTCTGCGGACCGACTGTATCCTGGACACCGTCCGAGATCTGCGGGCTCGTGGCGTGGAG
TTCATTTCGGTCCCTGGATCTTACTACGAGAACATGAAGGAGCGGCTGGCAAAGTCATCT
CTGAAGCTCGAGGAGAAGTTTGAGGATATCCAGGCGCTCAACATTCTGATTGATTTCGAC
GAGGGCGGATATCTGCTGCAGCTGTTCACCAAGCCTTTGATGGACCGGCCCACCGTGTTC
ATTGAGATCATCCAGCGACGAAACTTTGAGGGTTTTGGCGCCGGCAACTTCAAGTCTCTG
TTTGAGGCCATTGAGCGGGAGCAGGCCAAGCGAGGCAACCTTTAGTCATCTCTAGAGACG
AGGCGTGCAATTTCAATTAACCTGGCCAAGCAATACACAGATAAATATGAGCAAACTTGT
ATACTACGTGGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21846g_CDS-001

Protein length: 395 aa.
Product: 4-hydroxyphenylpyruvate dioxygenase

>YALI0B21846g_CDS-001 MSPSVEVTPAHTPTSYEVTNSLDSYRGYDHVHWYVGNAKQAASFYITRMGFSPIAYKGLE
TGSRDVTTHVVGNGQVRFAFSSALRTGEPQADEIHAHLVKHGDAVKDVAFEVDNVEQLFS
AAVKKGVRVISEPKVLKDAHGSVTYAVISTYGDTTHTLIERGSYEGAFLPGFVDTSANKD
PIAAFLPNIELMHIDHCVGNQDWNEMDNACKYYEETLGFHRFWSVDDKDICTEFSALKSV
VMASPNEKIKMPVNEPAVGKKKSQIEEYIDFYDGPGIQHIALRTDCILDTVRDLRARGVE
FISVPGSYYENMKERLAKSSLKLEEKFEDIQALNILIDFDEGGYLLQLFTKPLMDRPTVF
IEIIQRRNFEGFGAGNFKSLFEAIEREQAKRGNL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG