YALI0B21662g

Overview

Description weakly similar to uniprot|P06105 Saccharomyces cerevisiae YJL080c SCP160 required for maintenance of exact ploidy
Locus type CDS
Locus tag YALI0B21662g

Location

Species Yarrowia lipolytica Positions 2850721..2854464
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 3744 (nuc.)
Previous locus YALI0B21648r Next locus YALI0B21670g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B21662g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B21662gYALI0B21662g_mRNA-001YALI0B21662g_CDS-001

Nucleotide sequence

 

>YALI0B21662g
ATGTCCGACCTGTCCCCCGCTGAGCTTCTCCGGCAACGACATGCTGCCGTGAGCGCTGCC
GCCGAGCCCACCCTCACCGTTTCTGAGGGCTCTCTGTCCAAGGAGTCTTCTCCCGTTCCC
GAGATTGCCCCTGCCGCCCCCGTGAAGTCTGTCGCCGGTCCCTCCGCCGCCTCCAAGCGA
AAGGGTCTCGATATCAACTCTCTCGAGGCTTTCCCCGCTCTTAATGGTGGTGCCGCTGCC
CCCAAGGCTGTTTGGGGTAAGGGAGGCTCTGCTCCCGCTGCCCCCTCCCCTCAGTCCTTT
GGTCGAGCCGCTTCCACCACTATCTCCGATGTCTTCACTCTCAAGCGAGAGGAGCAGCAG
GTTGGTGTGCGATCCGAGCTGCCCAAGATCATTGCTAAGGTCAAGGCCAACACCTCCACT
ACCATCGACTCGTCCACCTCCAAGATTACGGGCCACACCTCCTTTGTCATCAAGGGTACC
CCCGAGAACGTGGCCAAGGCCCGACGTGAGCTGCACCGAGCCCTGTCCCAGAAGATTGTC
GCCAAGTTTGAGATCCCCGCTAGCGTGCGAGCTGCTGTGATTGGCCCTCGAGGTTCCAAC
CTGAAGCCCATTCTTGAGAAGTCCGGTGCCCATATCCAGATTGAGAAGCTCGAGTCCAAC
GGCAACAACGCCGACGACGACGAGGAGACGGTCGAGGTCATCGTCGAGGGTGACTCTGAG
GGTATTGCTATTGCCAAGCAAGAGATCTTTGCCATTGTGTCCGAGCGAGTCAAGAACATG
ACCATCCGAGTTCGAAACGTCAACTATGTGCTGTTCCCCTTCCTTGACAAGACCGCCGGA
GACCTCACCAAGGGCGAGGACGACGTCAAGCTCAGCATCCCTGATATCTTTGCTCCCAAC
TTCACCACGGCCGCCACCATCACTCTGTCTGGCGACCGAGAGGCCACCGCTACCGTCAAG
GAACGACTTGAGCGTCTTGCAGAGTCTCTGTCCACCGACCTTATCACCTCCACCGAGTCC
TTCCCTGCTTCCAAGCACAAGTACATTTCTGCCAAGGATGTCTTTGCCGCCACCTCCGTG
TTTATCACTGTGCCCCAGGCCCCCAACACCTCCGATGACACCGTCAAGTTCCTGGGTCTG
CCCAAGGACATCAAGCCCGCCATGAACAAGGTGTCTGAGCAGGTTAACTCCGTCAAGATT
GATCTTTTGGACATTTCTCGAGCACATGGCAAGAGCGTGCCCCATGCCCAGGCTTTGGCT
TCTTACTTCAAGGCCTCTGGTATGCTCCAGAAGATTGCTGACGAGTACAAGGTCGAAATC
TACATCCAGCAGCCCGATCAGCTCTACGCTCCTGGCGCCCAGGCCGTCACTATCGAGACC
TCTGGTCCCAACGAGGAGGCTGTCAAGGCTGCCCGAAAGGCCATTGTGGCTCTGGTAAAC
AAGTACGAGCCCTCCAAGGTCTCTCGAGTGTCTGACATTGATCCTTTTTTCCTGCGAAAC
CTCGCTGGCCCCAAGGACCGAAACCTGGCCAAGTACAAGAAGGACCACGGAGTCACTGTC
CTGGTGCCCGAGAACCCCAAGGTTAACGGTGACGTGATTCTCATCTACGAGGGCACCTCT
GAGGAGGATGATTTCGGCCCCTCCGCCGACGAGATCAAGGCCACCTTTGCTGCTGTCGAC
TCTTCCTTTGCCGATATTCGAGAGAAGCAGGCCAAGATCATTGGCAAGCTAATTTCCGTC
CCCGTTGGCGAACACAAGTTTGTCCGAGGTCCCGATAACACTACCCTTCGAGCCATTGTT
GGCGGAACCGAGGGCCACGAGCCCTTTGTCCGAGTCACCTTTGGTGACGAGATCAAGGAC
GCTGAGGAGCCCGTTTCTGCGGACTCCATCTACGTGCGGGGTCTCAAGGATGAGGTCACC
CGAGTGCTCAAGGAGATCGAGGAGGCAGTGGAGGACGGCAAGAACTATGCTGTTCTGTCC
CAGTACACCACCGAATTCCAGATCCCTCCCGAGCATGTCAAGCATGTTGTTGGCAAGGGC
GGCTCCCAGCTCGCCAAGTTCCGTGAGTACGGCGTCAACATCGATCTCGACGAGTCCGGT
CAGGGTGTTGTCAAGGGTATCAAGAAGAACGCCGACGAGGCCAAGGTTCAGATTCTGGCT
TTCGCCAAGAAGATTGCCGACGAGGTCAACGTCAAGCTTCCTGTGCCTGCTGACCACCAC
GCCTCTCTGATTGGAACTGGTGGCAAGTTTGTCAAGCGACTGGAGGAGAAGTATGACGTT
CGAATTCGGTTCCCCAAGACCGGTGAGGAGAACGCCAACGAGATCGTCCTTCGAGGTCCC
TCCAAGGGTGTGGCGAAGGCCAAGGAGGAGATTTTGGATCTCGTAAACTACGAGATTGAG
AACTCGCACTCGCAGACCATTTCCGTCCCCGTCAAGTCTCTGCCCCGAATCATTGGTCGA
GGCGGAGAGTTCATCAACGACATCAAGGACTCCACCAACACTCGAATCGACGTCAAGCAG
GAGAAGTCGGATAACACCGACGAGACCGGCAACGTTGACATTGAAATTGTTGGTACAAAG
GCCGGCGTCAAGGAGGCTGCTGCCAAGATCCAGGCTATCGTTTCTGAGTTCCAGGACACT
GTCATTGAGCACATTGAGGTGAACCCCAAGTTCCACGGTGCTCTGATCGGTCCCGGCGGT
CAGACTCTCAAAGACATCCTCACCAAGGCCGGTATGACCGACGTGACCCCCTCCGTTGCT
GCTCGAACCGTTGCTGTTCCTGCTGCCGGCACCAAGGATAACAAGGTGCGAGTCCAGGGC
TCCAAGAAGATTGTGGCCAAGATTGTCAAAATCATCCAGGACATGGTTGCCGAGCGGGAG
TCCCAGATCTCTGAGGTTGTTGATGTGCCCGTTTCCAAGCACCGAGATCTCATTGGAGCT
GGAGGTGCTGCCAAGCGATCCCTCGAGGAGAAGTTCAAGGTTACTCTGCAGATCCCCAAG
CAGGGCGCCAAGAACAAGGATGGAGAGCTCGACACCGGCGTCTCCATCACCGGTAAGGCT
GAGGATGTCGCTACCGCCAAGGCCAAGATCCAGGAGCTGTCCCAGGACAAGTGGAAGGAG
GAAATTCTGGTCCCCCGAACCTTGCACACCACTGTGTCCGACAACGGAAACCTGCCCCGA
AAGCTCAAGTACGAACTCAAGGTTAACGTTGACCACGGCTCTGTCCGAACTCCTCGAGAC
GGCAACCCCGTTGTCCCCGCTGGTGCCATTGGCTCCGATTCTGAGGACAAGGACTCGTTC
CGATGGTCTGTTGTCGAGGACGCTGTCGACCACGCTGCCAACGGCACCATCCCCTGGAGG
CTTGAGGGCTCTGACGAGAACGTTGCCAAGGCTAAGGCCATCATTGAGGCTGCTCTGGAT
GTTGCTCTCAAGCACACTCAGACCGGATACCTGTGGCTCCCTGACACCTCTCGATACCGA
TTCCTGGTGGGTCCTCATGGAGCCACCGTGTCTCACATCCGAGAGAAGTCTGGCTGCAAG
ATCTACATCCCCAAGGCTGGTGTTGCTGACTCTGCCGTGACCGTGCGGGGCTCCCCCGAG
GGTCTGGAGAAGGCCAAGGAGATGATGCTTGCTGCTCTCAAGAAGTAAGCTTGTGTTTGT
TTCAGGGATGCAAAAAATGTACTGCGGGTACGATTCGGTAGTATTTAGTATTTAGTATTT
ATATCATTTGAGATTGTATGTTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B21662g_CDS-001

Protein length: 1216 aa.
Product: Conserved hypothetical protein

>YALI0B21662g_CDS-001 MSDLSPAELLRQRHAAVSAAAEPTLTVSEGSLSKESSPVPEIAPAAPVKSVAGPSAASKR
KGLDINSLEAFPALNGGAAAPKAVWGKGGSAPAAPSPQSFGRAASTTISDVFTLKREEQQ
VGVRSELPKIIAKVKANTSTTIDSSTSKITGHTSFVIKGTPENVAKARRELHRALSQKIV
AKFEIPASVRAAVIGPRGSNLKPILEKSGAHIQIEKLESNGNNADDDEETVEVIVEGDSE
GIAIAKQEIFAIVSERVKNMTIRVRNVNYVLFPFLDKTAGDLTKGEDDVKLSIPDIFAPN
FTTAATITLSGDREATATVKERLERLAESLSTDLITSTESFPASKHKYISAKDVFAATSV
FITVPQAPNTSDDTVKFLGLPKDIKPAMNKVSEQVNSVKIDLLDISRAHGKSVPHAQALA
SYFKASGMLQKIADEYKVEIYIQQPDQLYAPGAQAVTIETSGPNEEAVKAARKAIVALVN
KYEPSKVSRVSDIDPFFLRNLAGPKDRNLAKYKKDHGVTVLVPENPKVNGDVILIYEGTS
EEDDFGPSADEIKATFAAVDSSFADIREKQAKIIGKLISVPVGEHKFVRGPDNTTLRAIV
GGTEGHEPFVRVTFGDEIKDAEEPVSADSIYVRGLKDEVTRVLKEIEEAVEDGKNYAVLS
QYTTEFQIPPEHVKHVVGKGGSQLAKFREYGVNIDLDESGQGVVKGIKKNADEAKVQILA
FAKKIADEVNVKLPVPADHHASLIGTGGKFVKRLEEKYDVRIRFPKTGEENANEIVLRGP
SKGVAKAKEEILDLVNYEIENSHSQTISVPVKSLPRIIGRGGEFINDIKDSTNTRIDVKQ
EKSDNTDETGNVDIEIVGTKAGVKEAAAKIQAIVSEFQDTVIEHIEVNPKFHGALIGPGG
QTLKDILTKAGMTDVTPSVAARTVAVPAAGTKDNKVRVQGSKKIVAKIVKIIQDMVAERE
SQISEVVDVPVSKHRDLIGAGGAAKRSLEEKFKVTLQIPKQGAKNKDGELDTGVSITGKA
EDVATAKAKIQELSQDKWKEEILVPRTLHTTVSDNGNLPRKLKYELKVNVDHGSVRTPRD
GNPVVPAGAIGSDSEDKDSFRWSVVEDAVDHAANGTIPWRLEGSDENVAKAKAIIEAALD
VALKHTQTGYLWLPDTSRYRFLVGPHGATVSHIREKSGCKIYIPKAGVADSAVTVRGSPE
GLEKAKEMMLAALKK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG