YALI0B20548g

Overview

Description highly similar to uniprot|Q6C9E1 Yarrowia lipolytica YALI0D11924g, part of a 30-member gene family in Y. lipolytica
Locus type CDS
Locus tag YALI0B20548g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 2708145..2709647
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 1503 (nuc.)
Previous locus YALI0B20526g Next locus YALI0B20559g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B20548g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B20548gYALI0B20548g_mRNA-001YALI0B20548g_CDS-001

Nucleotide sequence

 

>YALI0B20548g
ATGGAACTCCCTCCGGAAACTGTGTACAATATATTTGCCCATGCCGAGCTCGAAACGTGT
GTGGATTTGAGGGAAGTGAGTACCTTCTGGTACGCGGCATTCAACCAGCTGGATGCACGG
CTCTTGAAGCAGAAAGTGAAAGAGAGGAACCCTTGGTGTTGAAGCCTGGAGAAGACGGAA
CGGAACTGAAAACATGGAGGGATTGTGTCCGGGTGTTTGTGGGACGTTTGGGGGTCAGGT
AAGTGGACGTCAATTGAGTGTCTCGAGGACATTAAATACCCTACAGAGCTGACAGAAGCG
ATTTCCTTGAATATTGACGGGGTAGAGACCACTCTTCCAAAAGATTACAAGCCTCTGATG
GTCACGCGAGAGCCACAGTACAACACCATGTTGGAGCTGGATGACAATTACTACATGGAC
TTGCATACCATGATGGCTCATAGATCTCAGCCTCCTTCATCGCTACTGGACTTTCTCAGG
ACAGTTGAAGAGACTGACGAAATAGGAGTATACGACTGTGATGGTGTGAGAGTTGTTGTT
CCGATAGACATGGTCACGAATAAAACAAGCTGTGACGTCAACGAAGACATGGTGGTGGTG
TACAGCGCACAGGACGTGTGGATTTTTTGCCTCGAGAATACCCAGACTTTCGGCAAGGAC
GCGGATGGAAGCGTTCAGGAAAGGGAATCACTAACCGAAGAGGTCAAAGAAATATGACCT
CTGGTTATACGTTTTTGGTCGAGGATGATGATCTTTTGCGGGTTCCACAGCCAATGGTGC
TTGTTGTCGATCTGGACAACCGACGAGTGCTTCATATTGCAGAGACACGAGATGTCAAGT
TTGATGAATCACATGTCGATACTGACGAGGTTCCCAAAACTAATTCGTTTCTATCGTCGG
TCGTAGGAGTTAACTCGGTTTATAATGGACTCCAATGGATGGTAGACCGTTCTCCAGAAG
GGTACATGGGGTTATTTCCCATTTTCATCGACATGAAAGATATTCCTGAGGACGATGGAA
GTGGGACTACAAGAGTGAGCAAGATGTACTATTGTAAAGACCGGATCATGCTGTTCGAAA
GGTACATGGACTCTCTCTTCTCTAGTATCCCACGGGGGGCTCAACCATACGTACTGTTTC
TCTATATTACCGTGTATTTTGGGGGAAAGAGACAAGAATCTTTATTAATTGTGGATCTGG
CTACCTGGAATGTCTGGTTGATGAAAGAAAACTTTGAGTTGAACCAAGGCTCTCTGGTAT
TATTTGGACGAGAATTGTTTGTTGGATATTCAGAGGGAAAACTGGGAGCCTAGATGTACA
GTCAGGATATGATCGATATCTACAAGACACGTTTACTGCGAATGAAGATGTTGTATCCAC
GCAGGGGGGAATATGACGTGGGCAGGGACATGAGCCTGGAGGATGATTTTGAGGTACAGG
ACCAGTTGGAGTAGAGTAGGAGTAGGAGATGGTGTTATAATTTATTGTAATTTGTGTTTT
TTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B20548g_CDS-001

Protein length: 484 aa.
Product: Hypothetical protein conserved in the Yarrowia clade

>YALI0B20548g_CDS-001 MELPPETVYNIFAHAELETCVDLREVSTFWYAAFNQLDARLLKQKVKERNPWC*SLEKTE
RN*KHGGIVSGCLWDVWGSGKWTSIECLEDIKYPTELTEAISLNIDGVETTLPKDYKPLM
VTREPQYNTMLELDDNYYMDLHTMMAHRSQPPSSLLDFLRTVEETDEIGVYDCDGVRVVV
PIDMVTNKTSCDVNEDMVVVYSAQDVWILPREYPDFRQGRGWKRSGKGITNRRGQRNMTS
GYTFLVEDDDLLRVPQPMVLVVDLDNRRVLHIAETRDVKFDESHVDTDEVPKTNSFLSSV
VGVNSVYNGLQWMVDRSPEGYMGLFPIFIDMKDIPEDDGSGTTRVSKMYYCKDRIMLFER
YMDSLFSSIPRGAQPYVLFLYITVYFGGKRQESLLIVDLATWNVWLMKENFELNQGSLVL
FGRELFVGYSEGKLGA*MYSQDMIDIYKTRLLRMKMLYPRRGEYDVGRDMSLEDDFEVQD
QLE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG