YALI0B18942g

Overview

Description weakly similar to uniprot|Q6CGT3 Yarrowia lipolytica YALI0A16423g, probable endonucleases of the DDE superfamily
Locus type CDS
Locus tag YALI0B18942g

Location

Species Yarrowia lipolytica Positions 2488690..2492295
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 3606 (nuc.)
Previous locus YALI0B18920g Next locus YALI0B18964g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B18942g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B18942gYALI0B18942g_mRNA-001YALI0B18942g_CDS-001

Nucleotide sequence

 

>YALI0B18942g
ATGATGCCTGCAAGGCCACCAAGCGAGCAGCAAGATGCTCCTGGTGCTCCTCTACAAGGG
GTTCCTCTCGAGTGTTTCAATGACGACATCTCAGACTGTGACGACGAAGGAGAGGATATC
GAGCCCGACGACGACATCGACCCAGACCACGCGGAGTTGGAAGTTGTTCCTGACCAACCA
GAGATTCGTGTTGGGCCCGAGAAGGTCCATAGGGTTGTCAGCGACTACCGAGAACAGATC
AGCAATCCACAGCCCGACCTGACCCCTCCGAAACGAGTGGACGACCTAAGGTGTGTTGCG
GAGAAGTACGAAGAATTGGAGGGATACCGCCGCGCTGGGGGGCTCACTCAACAGCAAGTC
GGCGAGCAGCTCCGCGAATATGCCCTCTCGATCAACGTGCGTTTGCCTAAAAAACCCTCC
GATGCCAGGAAGGAAGTCAAGAGGAAGGCAAGGAATTGGCTTGACAAGCAGAGACCTGAT
AGGGGAGTCGCAAAGAAGCGTTACCATGATCTGGAGGAGGGAGTGATATTTGTGTTTTCC
AAGACCACCAAGGTCGCCTCACTCGACATGCACACTGCTACCATTATTGTCAAGAAGCTT
CTAGACAAGATAGTGGCCCTGGTGCCTGACTACAGGGAGCTGTGCGGCATGAAAAACCCC
GTGCCCCACCGCCATTGGATCAGGGACTGCCTCATTGAGGCAAAGAGACGTCAGCTTCGC
GAGTATGGCGAACGAAGCTCTGTGATTGATGAGAAGGCCGTTGAAAAATTGGGGTACATT
TGGCTGGCCATCGAGGGCTATGCGGCAAGCCAGATCCTCAATGCAGGCCAGACGTGCATG
TACCTGGGCTTCGACGGTCAGGAACACAAAGTCTGGACCAGCCAGCCGTTTGTGGGCGTG
AAATGCAAAAAGGGCCAGTTGACTTACACCTTCATGTTCTGCTTGAGTGCTGACGGGTCG
TTTCTCTTCACGCCTCATGTCTATGGGAAGCAGTACTGGCCCATGTGGTGCTCAAAGGCT
CAGGACTTGCACAACCCGGCTCGTGCGGTGGTCCCTGTATCTGTCACGGAAGAGTGTACG
GCAGAGGCGACTCTCTTGCTGCACGCAGAGGCAGATGCGGTCAGAATCCTCGAGTCTGAG
GTTGAGCGTGCCACCAGTGAGAGAAGAGAGGCCCACGCGGTGTGGCTATCGTCTCCGAAA
CAAACTCAGACAAGGATAGACAACAGGGCCACGTGGAAGAGCCTTGTTGCGGAGGAAACT
CGGGCTATGGCCGCTCACGATGCAGCGCAGAGGCAGTACTCGGCAACTCATACGGCGAAG
GTAAAGGAACTGGTTTTGGAACGGTGGACACCTCCTGATACCTCTGCCGATGAGGGTTTC
TATGCACACGACGACTTCGAAGCACGTTCCGGTCGTGAGCTACAGCTGCCTGTTGTCTTT
GAGAGATCTCAAGATGTCAAGAAGTTGGAGAAGAGACTCGCTGCATCGGAGTCTGCTCAC
AAGTCGTTGCAAACGAAGGAGTATGCGGCACGCAGAGCCTTGAAAACTTCCGAAAAGCTC
TTCGAAAAGCACGAGAAGAAGGAGGCCGAATTGCGAAGGCAGATGGATGAGCAAGACAAA
GTGATTACCCTTCTCAATGAGGACCTCGACAAGACTGCGACCCATGGCCAGGACACGAAG
CCAATCGAGAAGGCGATCGAACTGGCCGACAGTCGGCGCCGAAAGTTGGCAAGCATGCGC
TCGATCGCCAGACAGAGAGCTGGCAAGGCGTGGGAGAAGATCTCAGACAACGAAGAGCGG
CTCGAAGTCATCGCCACTGAAAAAGAAGCTGCATGGGAGGAGATGGTCAGGGTCATGCAC
AGCTACGCACTTTCTGACGACGACGCTGTCATGAAGACGGGGCCTCTCAACCTGATGGAC
TGCAGATACCAACAGCAGTCTAAAGGTTGGATGGACACCCCTACCATGGTGAAGTGGTTT
GTTGCTCTCGCCAGGGCTGTTAAAGCGAAGGAGAAGCCTGTCATTCTGATTCTTGACAAC
GTTGCGTTCCACCACAGAGCCTGGAACATTGCCAAAGGATGGGAAGAGCTCGAAGGAGTG
ACGGTTGTCTTTCTGCCTTCCGAGGCTACGTCTTACACCCAGCCTTTGGACTTCGGTATC
TTTGCCTTTACCCAGATGACAGCAAAGAAGCTACTGAGTCAGTTCTACATGGCCACCCAG
ATCGTCTGGGGCGATTCCTCCAAGGTCGGCGCGCTGCACAAGATCAACTACATGGTTCAG
GCGTGGGAGAAGCTGAAGCTGAAACCGGATACAGTTGCTGGCTGCTTTGGGAGCAGCCCC
GTCTTTGCAGACCACGAGCATGTCTTGCCCTCCAAGACCGTGCAGAAGCGGGTCGATGAG
AGACTTGCCAAGGAGGCCGCCGCAAGAGCTCTTCGGCAAGCACAGCAGCCCCAGGAGCAC
GTGAGGGGAGGAAGAAATGATGGCACGGCTCCACCGGTGGCCACTATTCAATCGCCCCCC
GCGCCCGATGGGTCCACCACCTCTGAATCCTCCAGCTCCTCTGGAGGCTCAAATATGATG
CGGAGCTCTTCCGATCAGTCGGATACCCTGGAAGACTCTCTGATGGACTCCCCGATGGGC
TCTCGAGAGGAGTCCTTGGGCGACACCCTGGAATTTCCGGTGCACTACGAAGATGGGGCA
GATGATGAGGCTGACGATGCGGCTGAGGTTGAGGATGGCGACGAGGTCGAACCCGTGGCA
CCTGAAGAGGAGATCGGAATCAACGACGCTGAGTTCGGAGAAGTCTCTAAAGAAAACATG
CTTGACCTCATCAGCAGATTGGACCTCAATCACATCTTGCCGCACGGCACTCGGAGACTC
ATCAGAAACACCAACGCACGGCGTGCTCACCTGGCTGACAAGGAGAAGGCCCGAAAGCGG
GAGGCGAACAGACTGCGAAGACGAGCAGCCCACTTGAAACGGTATGGCTTTCTGATCAAC
ATGGGGCGCGCGCTTCCTCAAGATGCGCCTGATGGCTTCCCACGTGCAGATATTCCACGT
GCACGCAACCTCGTCGAGCCTGCCCCCGCCTCTTTCCAGTCTCCGCACGATCACGTTGAG
CCTGCTGTGGTTGCCATGGAGGTGAATGAGGACAGCATGGATATCGACACTGCTGATCAC
TGGGACCAACAGGACGTGGAAGCCGCCGCTTCGCCCATGGTTCACTCAGAGACCCCAACA
CGACTCCCTCCCGGCGACGCACAAGAGGACACCCCGTACAACCCGTATCCTCCTGGACAC
CCCTTGGAACACATTTACGGTACCCCTTCTCCTCAACCATCCCATGGATACCGCCCTTCG
CCCTCTGGATACCCCCTCCTCTTCCGCCTTCCATACCCAAACCGATACCCAAGCCAATAC
CCAAGCCAATACCCAAGCGGATACCCCCAGTCTCACTCAGAGCAGCTTCAACCAGCTCCA
GTGGGCTACTTGTCTTACGGCCTGGGCAGCCCGACTCGTGGTGCCAGCTTTGGCACTCCT
GGCAACAGGGGCGCTAGCTCCTTTGAGCTAAGGCGGAACCTCTTGCCGGCGTTCCAGGGG
CACTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B18942g_CDS-001

Protein length: 1202 aa.
Product: Hypothetical protein of a 30-member gene family, conserved in the Yarrowia clade

>YALI0B18942g_CDS-001 MMPARPPSEQQDAPGAPLQGVPLECFNDDISDCDDEGEDIEPDDDIDPDHAELEVVPDQP
EIRVGPEKVHRVVSDYREQISNPQPDLTPPKRVDDLRCVAEKYEELEGYRRAGGLTQQQV
GEQLREYALSINVRLPKKPSDARKEVKRKARNWLDKQRPDRGVAKKRYHDLEEGVIFVFS
KTTKVASLDMHTATIIVKKLLDKIVALVPDYRELCGMKNPVPHRHWIRDCLIEAKRRQLR
EYGERSSVIDEKAVEKLGYIWLAIEGYAASQILNAGQTCMYLGFDGQEHKVWTSQPFVGV
KCKKGQLTYTFMFCLSADGSFLFTPHVYGKQYWPMWCSKAQDLHNPARAVVPVSVTEECT
AEATLLLHAEADAVRILESEVERATSERREAHAVWLSSPKQTQTRIDNRATWKSLVAEET
RAMAAHDAAQRQYSATHTAKVKELVLERWTPPDTSADEGFYAHDDFEARSGRELQLPVVF
ERSQDVKKLEKRLAASESAHKSLQTKEYAARRALKTSEKLFEKHEKKEAELRRQMDEQDK
VITLLNEDLDKTATHGQDTKPIEKAIELADSRRRKLASMRSIARQRAGKAWEKISDNEER
LEVIATEKEAAWEEMVRVMHSYALSDDDAVMKTGPLNLMDCRYQQQSKGWMDTPTMVKWF
VALARAVKAKEKPVILILDNVAFHHRAWNIAKGWEELEGVTVVFLPSEATSYTQPLDFGI
FAFTQMTAKKLLSQFYMATQIVWGDSSKVGALHKINYMVQAWEKLKLKPDTVAGCFGSSP
VFADHEHVLPSKTVQKRVDERLAKEAAARALRQAQQPQEHVRGGRNDGTAPPVATIQSPP
APDGSTTSESSSSSGGSNMMRSSSDQSDTLEDSLMDSPMGSREESLGDTLEFPVHYEDGA
DDEADDAAEVEDGDEVEPVAPEEEIGINDAEFGEVSKENMLDLISRLDLNHILPHGTRRL
IRNTNARRAHLADKEKARKREANRLRRRAAHLKRYGFLINMGRALPQDAPDGFPRADIPR
ARNLVEPAPASFQSPHDHVEPAVVAMEVNEDSMDIDTADHWDQQDVEAAASPMVHSETPT
RLPPGDAQEDTPYNPYPPGHPLEHIYGTPSPQPSHGYRPSPSGYPLLFRLPYPNRYPSQY
PSQYPSGYPQSHSEQLQPAPVGYLSYGLGSPTRGASFGTPGNRGASSFELRRNLLPAFQG
H*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG