YALI0B03190g

Overview

Description similar to uniprot|Q873D6 Neurospora crassa B17B1.060 Related to a retinal short-chain dehydrogenase
Locus type CDS
Locus tag YALI0B03190g

Location

Species Yarrowia lipolytica Positions 470086..471454
Strain CLIB 122 Strand Antisense
Chromosome YALI0B Total length 1369 (nuc.)
Previous locus YALI0B03168g Next locus YALI0B03212g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B03190g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B03190gYALI0B03190g_mRNA-001YALI0B03190g_CDS-001

Nucleotide sequence

 

>YALI0B03190g
AGAAAACATCCAGTGCTGCCTTCAGCCTGAGAAAAAACTACAGACCCACCACATTTCGAA
ACCCACAGCTACCCGGAATTCGCTGATCCTTGCTGATATCTATCTGCTGGCCAGACTAAG
AAACATCACAAGTTTCTCCCATACCGCATCTCTCTCTGTGTAAGTACACCCATAAACGTA
CCTTGCATTTGACTTTGCACACGACATGACAGGCGTGGTCGGCCACATGGAACACGAGAT
ACTAACCCAGCTGCGCTGAAGTGGCAAACGCTTTAGCCTACAGAACCGACAGCTCTACCC
ACAGCCTCCAAAATGCCCATCTCTCGAATCAGCGGATTCATCAGCTCCACCATGGACAGC
CTGGATGGTCTTCGGCCCAGCCGAATGCTAATGTCCCCGGCCAGCTCCATGAAGCTTGAA
CACGACAGAGACACGGTAGTGGTAACCGGCGGGGCAAGCGGCCTTGGCCACGAGATTGTC
AAGCTGCTGGCCAAGAAGGGCACCAAGCATATCTTCGTCCTGGACATTGTCGAGCCCATC
CCCTCGGAGCGTGTGGACAACGTCACCTACTACCACTGCGACGTCGGCAGCGAGGAGTCC
GTGAACAAGATTGCTGCCCGGATCACCAAGGAGGTTGGCCACGCTACTGTGCTGATCAAC
AACGCCGGTGTGACTGTCGGAAAGACTGTTGGGGACTTGACTATGGAGGAGATCAACCGA
ACTCTGCGTGTCAACCTGGTGTCTGCATTCATCACCACCAAGGCCTTCCTGCCTGGCATG
CTCGAGCTCCAGCGAGGCTACATTGTGACTGTGTCTAGCGTTCTAGGCCACATGTCGCCC
GCCAAGCTGAGTGTCTACGGAGCATCCAAGGCTGGTCTGATTGCATTCCACGAGTCGCTC
ACCTATGAGCTGGGCCCTCCTTCGCAGACCACTCGAGGTGTCAAAACAATGCTTGTTACC
CCCGGACAGATGGCTACTCCTCTGTTTGATGGGGTGCAGACTCCGAACGAGTGGCTCGCT
CCGGTGCTGAAGCCTGCGGACGTGGCTGCCAAGATTGTCTCGTCGATGGAGAAGGGGTCT
ATCGAGACCATTTCGTCGCCTCTCTACACCAACTTCCTTCCCGTGTTTCGGTCTCTGCCG
TGGCGGCCCGTCGAGGTTGCTCGGCGATTCTCCGGCATGGACCGTGGGATGGATACTTTT
CGAGGCCGTCTTTAGATAGACTCTCGTAGCCTCGGCTTGTGGATTTTAAACGACGTTGGG
ACTTTTCTGTGTGTGGCACTTGGGGGGTGGGATGGTGGCTGGCCTCTCGGCTGGCGTTAT
TTATAGATTGACTTGTGTCAGGTTAATTGAAAGTGACTAGAGTGACTAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B03190g_CDS-001

Protein length: 301 aa.
Product: Short-chain dehydrogenase, putative

>YALI0B03190g_CDS-001 MPISRISGFISSTMDSLDGLRPSRMLMSPASSMKLEHDRDTVVVTGGASGLGHEIVKLLA
KKGTKHIFVLDIVEPIPSERVDNVTYYHCDVGSEESVNKIAARITKEVGHATVLINNAGV
TVGKTVGDLTMEEINRTLRVNLVSAFITTKAFLPGMLELQRGYIVTVSSVLGHMSPAKLS
VYGASKAGLIAFHESLTYELGPPSQTTRGVKTMLVTPGQMATPLFDGVQTPNEWLAPVLK
PADVAAKIVSSMEKGSIETISSPLYTNFLPVFRSLPWRPVEVARRFSGMDRGMDTFRGRL
*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG