YALI0B02134t - Ylli

Overview

Description Ylli relics, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli, inserted in the promoter of YALI0B02156g
Locus type mobile_element
Gene name Ylli
Locus tag YALI0B02134t
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 312465..313220
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 756 (nuc.)
Previous locus YALI0B02125t Next locus YALI0B02156g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B02134t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B02134tYALI0B02134t_mRNA-001YALI0B02134t_CDS-001

Nucleotide sequence

 

>YALI0B02134t
CAAGTGCGAAGTTCTTCTTTCCATGTTGACCAAGATGAAGATTCCGTCAGTGGACTCTCT
AAAGGACTGGATCTTTACCGAGTCGAAATGTGGAGTACTCCCCTCTTTCACAGGGCATGT
GAACAGTGACGCCCCCCGGAAACATCAACAAGTCAAGACACGCAAATATCTGCGGGAATT
GGCTTATGGGATCTGGAAGATGGAGAGATCCCTCCGGTACTCAGGGGACGACGCCACCCT
GGGACATGTCCAACAGGGTCTGCTTCAATTCCTGAAGGAAGCCCAGATGTGTTTCTACGA
TGGACAACCGCCAGCACTTCACGATGAGCGAGAGTAGACACAGTAGCAAGCGTAAAAGGC
GGCCGAGGCCACCGAGAGAACAGCGTAGCAGGGCGCGTAGTCACCACAGGGGACACAGAA
CCAAACCAATGACGAAGAAGAACCACAAGGAGACGTTTTCAAAGGCAATGCAAACGAAGA
GGGCAATGGAAGGACTGAGATTAGAGAACTGGAGACTGGAGTGGCGTTTTCCCGATGAAC
GAACAAACACGCGAAGCTATGTGGACCAACATACAACACGGACTGAACCAGGTTTTTTTA
TGATTTTTTTACTGGAAATAGGTACGTGCCAAGTTGGACATGACACTAAACGTGTTTAAT
TAGTAATATTCGTATAAGCGTACATTCATTTCAAAGGTTATTCTTTCACAGCAAAGTTAT
AATTAAATGAATGTATATGCAGAAAAAAAAAAAAAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B02134t_CDS-001

Protein length: 112 aa.
Gene: Ylli

>YALI0B02134t_CDS-001 KCEVLLSMLTKMKIPSVDSLKDWIFTESKCGVLPSFTGHVNSDAPRKHQQVKTRKYLREL
AYGIWKMERSLRYSGDDATLGHVQQGLLQFLKEAQMCFYDGQPPALHDERE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG