YALI0F27863g

Overview

Description similar to uniprot|P42744 Arabidopsis thaliana AXR1 auxin-resistance protein
Locus type CDS
Locus tag YALI0F27863g

Location

Species Yarrowia lipolytica Positions 3549763..3551371
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1609 (nuc.)
Previous locus YALI0F27852t Next locus YALI0F27885g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F27863g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F27863gYALI0F27863g_mRNA-001YALI0F27863g_CDS-001

Nucleotide sequence

 

>YALI0F27863g
ATGCACCGTGACAAACGCCAGCGAATGTCGGACTCAATTCCCAGCCAAAAAGACCGCAAG
TACGACCGTCAGCTACGACTATGGGCCGCATCGGGCCAACGTGCACTCGAAGATGCGTCC
GTGTGTCTTCTGGGCTCGTCTCCAGTCGCCACGGAAACCATGAAGAACCTGATTCTGCCC
AATGTCGGCTCCTACACCGTGGTGGACGGTGGCAATGTGACAGAGGACGATCTGTCGGCC
AACTTCTTCTTCGATTCAGATTCAATTGGAAAAAGCAAGGCTCAAAGTGCCAGTCTGTTG
CTTAACGAACTCAACAAAGACAGCACAGGCTCATATCTGGACCAGAAGCCCAGCAAAATC
GTAGCATCCAACCTCTCCTACTTTGACCAGTTCAGCATTATCGTTGCCTCTGTTTCTTCT
TTCGACAAGTACTCGGATCTCGAGGCCCTTTCGGAGTACCTCTACTCACACTACATCCCA
CTTGTGGTGATCTCTTCGGCGGGATTTTACGGCTACGTGCGAGTGGTAATGAAGGAGCTC
CCCATCATTGATACACATCCGGACTCGCTGGTAGATTTGAGATTGGATAGCCCCTGGCCT
GAGCTGATGGAGTACGTCAACAACTTCCCAGAGCCCGAAACGGCAGCAGCACGAGATCAT
GTCCCCATGATTGTTTTATTGCTCAAGACGGCTGATAAGTGGATCAAGGAACATGAGGGA
GGTCTTCCCACTAAGCGAGACGAGAAACTGGCATTCAAAAAACAGGTGGAAGCATTACGT
CAGGGAGACAGCGAAAACGTGGACGAAGCAGTGGCCGCAGTATGGAGACTGTACCAAAAG
AGCAACCAGGTGCCATCACAGATCCGGGACCTTTTTAATTTATCTGCTGAAGACTCTACA
GATAGAGATCCGACCTTCTGGACTCTGGTTGAAGCCCTCAAGGACTTTGTGGCTGAGACG
GGTACTTTTCCCCTGTCCGGAACCGTCCCCGATTTCAAGGCATACACCAAAGACTACGTT
GATATCCAGCGTGTGTATAAGGACAAGGCAAACAAAGACCTGTCCAGGTTCAAGGAGATT
GTGGCTACAAAGGTGGTGGAAGTTCCTGAGACTGTGATTGAGGAGTTCAGCAAGAACTCT
CGATTCATCCATCTAGCTCGAGGAACGTCTCTAACCCATGACATCAGTCCCGAGAGTCTA
GCCCAGATCACTTCTGAGGATGATGATCTTCTGAAACTCTACTACGTCATTCGAGCCAGC
CAGATGCTGGGGGGTAAACAGGACGCGTTTTCGATAATGACCAAGACTAACGAGCTGGGA
GTTACTGCTGACGTAGTGGAATACTCTCAGGAGGTCGCTCGATACGAGGGCCGAGAGCTT
CATAACATTTCTAGTGTTATTGGAGGGGTGGCGTCTCAGGAGATTGTCAAAATTCTGGCT
AAGCAATATGTTCCGTTGAACAACACTGTGCTCTTCGACGGCATTGGCAGTAAGATGGAG
AAGTGGTTGTTGTAGGTCTGCGACATATAGATTAATTGGATAGGGTGGGGGTATGTGGAT
CAATCTAGAAATGTACCTCATCAGGAGACCCTGGAATAGTCTGTTTCTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F27863g_CDS-001

Protein length: 505 aa.
Product: Auxin-resistance protein, putative

>YALI0F27863g_CDS-001 MHRDKRQRMSDSIPSQKDRKYDRQLRLWAASGQRALEDASVCLLGSSPVATETMKNLILP
NVGSYTVVDGGNVTEDDLSANFFFDSDSIGKSKAQSASLLLNELNKDSTGSYLDQKPSKI
VASNLSYFDQFSIIVASVSSFDKYSDLEALSEYLYSHYIPLVVISSAGFYGYVRVVMKEL
PIIDTHPDSLVDLRLDSPWPELMEYVNNFPEPETAAARDHVPMIVLLLKTADKWIKEHEG
GLPTKRDEKLAFKKQVEALRQGDSENVDEAVAAVWRLYQKSNQVPSQIRDLFNLSAEDST
DRDPTFWTLVEALKDFVAETGTFPLSGTVPDFKAYTKDYVDIQRVYKDKANKDLSRFKEI
VATKVVEVPETVIEEFSKNSRFIHLARGTSLTHDISPESLAQITSEDDDLLKLYYVIRAS
QMLGGKQDAFSIMTKTNELGVTADVVEYSQEVARYEGRELHNISSVIGGVASQEIVKILA
KQYVPLNNTVLFDGIGSKMEKWLL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG