YALI0F27489g

Overview

Description weakly similar to uniprot|Q1MTP1 Schizosaccharomyces pombe Required for transcription elongation, may also be involved in pre-mRNA splicing
Locus type CDS
Locus tag YALI0F27489g

Location

Species Yarrowia lipolytica Positions 3487687..3489364
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1678 (nuc.)
Previous locus YALI0F27467g Next locus YALI0F27511g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F27489g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F27489gYALI0F27489g_mRNA-001YALI0F27489g_CDS-001

Nucleotide sequence

 

>YALI0F27489g
TTCTCCTCACAACCCAACACACTAAACTCCGACAAAACGACGTGCTACTGTACTCTCAGA
AGCATCTTCATTTTCGCATTAACAACACAAACACAGGTAAAGTATTAACACAGATTCTTT
CCCGCTTCTAAACATGAACCACAAGTGTGAGTATAACCGTGGCAACTGTCATGTCACAAA
ACACGTCACTAATACAGACACACCCGTGAACTCGCGCTTATCTCTGGCTCGCCCACCAGT
GCAGCCTCCGCCACCTCCTCCTACGTCTGGGTCGGCGTCCGACTGGCCTGAAGGACTCAA
ACAGTTTGCCGCTGCGTGTTTTGCACGATGTCCTAGCGGCCCTGACAAGCCTATCATGGA
GGCTCAGTTGCGTAAGGTGATCACCGAGGCGTATAACACCAATACTGCATATTCGATCGA
TTGGAGTAAAATGGTGCTCCCCGTTTTCCTGCCCACCAACAACGGCTACACGAATAGTAA
CAACAATGGTCACATGAACAACAACGGCTACAACCACAACCTCAACACCAACAATAAGAA
ACGACCTGCATTTGACACTAACAAGAAACAGTTCAACTCCACGATGCCCCCAAAGAAGAC
GAAGACCAACAGCAAGCATGGGGAGGGCTATGTGGAGAACATCGGAAGCATATCGCGGAA
AGACCGACAGATGCGTTTCATGCGCGAGCAACAAGCGGTAGTCGGCAACGCTAACGCGTC
CCCAGCCCCCGAAGTGACCACCGACCAGCCTCTTGTAGGACGAAGTACTGCCCTGGAGAA
GAAGTACCTGCGGCTGACCTCCGCCCCTAATCCCGATACTGTTCGGCCCGTGGACGTGCT
GGAACGCACCCTGGAGCTGCTGATGACCAAGTGGAAGCAGGACCAGAACTACGCATACAT
CTGTGACCAGTTTAAGTCGATGCGGCAAGACCTAACGGTGCAGCGTATTCGAACGACATT
CACGGTCAAGGTATACGAAATTCACGCCCGTATCGCGTTGGAAAAGAGCGACCTGGGCGA
GTACAACCAGTGTCAGGCGCAACTTAAGACGCTGTACGAAGAGGGCCTGCCCGGCAACCG
GCTGGAGTTTCTTGCCTACCGGCTGCTGTACTTGCTGCACACACAGAACAAGCAAGAGGT
TGGCGACATTTTGGTTGAGCTGCTGGACGACGAAGAGGCAGCAAACTACGAGCCTGTGCA
GCACGCGCTGCAGGTGAAGACAGCCATGATGACTCGCAACTATGTAGAGCTGTTTCAGCT
GTATCGAACGGCTCCCCTGATGAGTGGCTACGTGATGGACAGCTTTGTGGGGCGAGAACG
TATTTTGGCTCTTTGTAAACTGACGCGGTCTTTTAGACCGACTATTCCTTTAGAAACGAT
TTCCGAGTGGCTGGGATTTGAGTCGGAGGGCGAGTGCACCGAGTGGTTGGAGGGGCTGGG
CGTGGCGCAGTTCATGGGTCCCAAGGGTCTGAGCTCTAAAGAGACTTATCCTGTGGTTGA
GGGACATCGACAGCAAGCCTTTATGAAAATCGACATCAAGGGACAGATTTAGACACGGCA
CAAGGAACACCGCAACGGAAGAAGAGCACGATTCCCTCCTTGGCTACTAGCTCTCGTAGT
CTTTAGCAGTATTAGATAGATGCCAGATGAGAATTATCGAATGTTTTGCGTATCTGCT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F27489g_CDS-001

Protein length: 456 aa.
Product: Conserved hypothetical protein

>YALI0F27489g_CDS-001 MNHKYTPVNSRLSLARPPVQPPPPPPTSGSASDWPEGLKQFAAACFARCPSGPDKPIMEA
QLRKVITEAYNTNTAYSIDWSKMVLPVFLPTNNGYTNSNNNGHMNNNGYNHNLNTNNKKR
PAFDTNKKQFNSTMPPKKTKTNSKHGEGYVENIGSISRKDRQMRFMREQQAVVGNANASP
APEVTTDQPLVGRSTALEKKYLRLTSAPNPDTVRPVDVLERTLELLMTKWKQDQNYAYIC
DQFKSMRQDLTVQRIRTTFTVKVYEIHARIALEKSDLGEYNQCQAQLKTLYEEGLPGNRL
EFLAYRLLYLLHTQNKQEVGDILVELLDDEEAANYEPVQHALQVKTAMMTRNYVELFQLY
RTAPLMSGYVMDSFVGRERILALCKLTRSFRPTIPLETISEWLGFESEGECTEWLEGLGV
AQFMGPKGLSSKETYPVVEGHRQQAFMKIDIKGQI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG