YALI0F27401g

Overview

Description weakly similar to uniprot|B8N4A8 Aspergillus flavus KH domain RNA binding protein
Locus type CDS
Locus tag YALI0F27401g

Location

Species Yarrowia lipolytica Positions 3478780..3480529
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1750 (nuc.)
Previous locus YALI0F27379g Next locus YALI0F27423g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F27401g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F27401gYALI0F27401g_mRNA-001YALI0F27401g_CDS-001

Nucleotide sequence

 

>YALI0F27401g
ATGCCGCCTCGACGATCAGGACGAAACAAGAAGAAGGACGAGGATGTGACGATGGCTTCT
GCCGACACGGATGTCAAGCAGGAAGTGCCATCTTCTCAGGACCAGGAGGAGACCAAGGAT
CAACCAAACAAACCGAAGCGTGGAAAAAAGCGAGGAGCTACTGAGGTGTCCAAGGAGGAT
CAGGTTAAAACGGAGGCTGGTACAGATGAAACAGCTGATGTCAAGCAGGAAACCACAGAG
ACTTCTAACGAAACACAAGCACCAGTTCAAGAGACTGCAGAAACGACGGTGGAATCTGAA
CAGACTGCCGACGAGGCATCTGTAGTGGCCCAGGTGGAGGAAAAGCTTGAACGGATCAAC
GACAAGAATGACAAGCTCAGCGAAAAGAGAGTATCCGACAAAGTGCTGGATCAGACGAAA
ATCACCCTGCGACTGCTGATGAGCAGACACGCCACAGACAAGGTGGATAAGACGGTCAAG
AAGACTGTGGAGGATGCAGGAATGACGATTGAGGTGGTGGATACGGTGAATGCGCCGGAA
AACGTGATTCTTCTACAAGGACCGTGTACCGGTTTGGATACTTGCATCAAGGCTCTATTG
GACCTCGACACAGCCCTAGCTCCTCCTGGAATGATCACACGACGGCTTAGACTGCTGTTT
GAGGATCAGGTGTTATCAGAGATTCCACAGATCAACATCGCCACAAACCAGAACCTGTTT
GCATCTCGACCTATTGATATTGTCACAGGTGTCCATGTGAGCGTAGGCATCTCTACCCTT
CCTCAGAGCACTGACAGAAGCGTGGTTGTTTCAGGACATGCGAATGCAGTCATCAAGGCT
GTTCGTGAGTTTCTCAAAATGATTCTGTTTATCCAAATGGACGGGTTGAAGGCTAATGGA
AACAACACAGATGCTGCCAATTACGAGATCGACTCCTCCACAGCTATTTCAGCTCCATAC
ATCTCTAAGCTGGTCACTGGCGTGTACGGTCACCCTGACACGTTTGTCAGACAGAAGGAG
AATGAAAAGTACGTTGGAAGCAATACATACATTACTCGAAGACGTCGGGTGGAGATTCCG
GATATCGATCTCCGAAACGTTCCCAAGGGACCCGCCGCCTCTGCTTCGACATACACCAAC
AACGGAAACAGCAATAGCCACGGATATAACAACCACGGAGGACACAACTACAATAACCAT
CGAGAAGGTGCAGGATACCACAACAGCGGTGGACCTCGAGATGGACCTCGAGATGGACCC
CGAGATGGACCCCGAGATGGACCCCGAGACGGACCTAGGGATGGACCTAGGGATGGACCA
CGTGACGGACCACGTGACGGACCACGTGATTTCAAGCCTCCTACTGGTCCTCGAGGTCGA
GGGGGTGATCGCCCTGTTCGCCAGGATGCCAGAGGTCCTGAGATTCGCGAGTTTTCACCT
CGAGAAGCCTCAGGACAGACCACTCAACAGATCAACGTACGAAAGGATATGATTGGAGCT
ATTATTGGCAAGGGGGGATCCTCTATTTCGGAAATCAGGAAGAAGTCCGGCACCAACATT
CGTGTGATTGACTCGGAGGACCCCAGTCAGTTGGAACGGTCAGTCAGTATCACTGGAACT
GCCGATGGAGTCAAAATTGCTGTCCGGCTAATCCATCAGAAGATTGAGCAGGAAAAACAC
ATGTATCGAAGAAGTTAGAAGGGGTAGGACAAACGGCATATAGTTATTGTATATCAGCAT
TATTGAGTAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F27401g_CDS-001

Protein length: 566 aa.
Product: Conserved hypothetical protein

>YALI0F27401g_CDS-001 MPPRRSGRNKKKDEDVTMASADTDVKQEVPSSQDQEETKDQPNKPKRGKKRGATEVSKED
QVKTEAGTDETADVKQETTETSNETQAPVQETAETTVESEQTADEASVVAQVEEKLERIN
DKNDKLSEKRVSDKVLDQTKITLRLLMSRHATDKVDKTVKKTVEDAGMTIEVVDTVNAPE
NVILLQGPCTGLDTCIKALLDLDTALAPPGMITRRLRLLFEDQVLSEIPQINIATNQNLF
ASRPIDIVTGVHVSVGISTLPQSTDRSVVVSGHANAVIKAVREFLKMILFIQMDGLKANG
NNTDAANYEIDSSTAISAPYISKLVTGVYGHPDTFVRQKENEKYVGSNTYITRRRRVEIP
DIDLRNVPKGPAASASTYTNNGNSNSHGYNNHGGHNYNNHREGAGYHNSGGPRDGPRDGP
RDGPRDGPRDGPRDGPRDGPRDGPRDGPRDFKPPTGPRGRGGDRPVRQDARGPEIREFSP
REASGQTTQQINVRKDMIGAIIGKGGSSISEIRKKSGTNIRVIDSEDPSQLERSVSITGT
ADGVKIAVRLIHQKIEQEKHMYRRS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG