YALI0F27049g

Overview

Description similar to uniprot|P40414 Saccharomyces cerevisiae YIL138C (ohnolog of YNL079C) TPM2 tropomyosin
Locus type CDS
Locus tag YALI0F27049g

Location

Species Yarrowia lipolytica Positions 3440537..3441246
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 710 (nuc.)
Previous locus YALI0F27027g Next locus YALI0F27071g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F27049g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F27049gYALI0F27049g_mRNA-001YALI0F27049g_CDS-001

Nucleotide sequence

 

>YALI0F27049g
ATGGACAAGCTCAAGGAAAAGATGAACTCGCTGCGGCTCGAGACCGATGCTGCCCAGGAG
AAGGCCGACGAGGCTCTTGAGAAGGTCAAGGCCCAGGAGCAGGAGCTGCTCCAGAAGGAC
CACGAGATCCAGGCTCTCACCCACAAGAACTCTCTGCTGGAGGAGGAGGTTGAGAAGCTT
GAGCAGCAGCTCTCAGAGTCCAAGGACGCCGCCGAGGAGGGCGCCACCCATGGTGCTGCC
AACGAGGGTCTTTCCAAGAAGCTGGCCATCCTGGAGGAGGATCTGGAGAACTCTGACCGA
AACCTGCGAGAGACCACTGAGAAGCTGCGACAGACCGACGTCAAGGCCGAGCACTTTGAG
AGAAAGGTCACCTCTCTCGAGCAGGAGCGAGACGACTGGGAGAAGAAGCACGAGGAGCTG
CTTGAGAAGTACAACGCCGCCAAGAAGGAGCTGGAGGAGATCACCCAGCAGCTCGAGAGC
ATCTAGGCGCTCGGACCCCTGCGATCCGGACAAGCTGCCAATGCGCAAGTTCAAGTTCAA
GTCTCCCCCCGTGTTACCCTGCTCCATTGGATGTTTATTTCTGGCGTCCTTCTGATCAGT
ATGATAATTGTGATGCTATAAAACCCTGAAGGGTGTGATTGTGTAGGTGTGTCCGTGTCT
GTACACGTGTGTTAATCGTGTAGTTGCAGTAACGAATTGTAGAGCTTTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F27049g_CDS-001

Protein length: 162 aa.
Product: Minor isoform of tropomyosin, putative

>YALI0F27049g_CDS-001 MDKLKEKMNSLRLETDAAQEKADEALEKVKAQEQELLQKDHEIQALTHKNSLLEEEVEKL
EQQLSESKDAAEEGATHGAANEGLSKKLAILEEDLENSDRNLRETTEKLRQTDVKAEHFE
RKVTSLEQERDDWEKKHEELLEKYNAAKKELEEITQQLESI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG